R Package For Nelson's Quality Control Rules

R package for visualization of omics data

This project leverages PLINK for GWAS Quality Control, focusing on SNP analysis and PCA for ancestry insights, showcasing the vital role of bioinformatics in enhancing population genetics research.

mirror of bioc msqc1 package

Shiny dashboard for monitoring the progress and quality of the household surveys of the TIPTOP project.

R Markdown report for building the Data Quality and Progress Report for the midline household survey of the TIPTOP project.

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

R package for reading, validating, and writing mzQC files

Testing the radiometry QC flagging from E. Organelli January 2015

Functions that generate SQL queries that summarize high-dimensional tables stored in various databases (e.g. Microsoft SQL Servers, Netezza, DB2, Postgres, Oracle, MySQL, etc.).

MagicalRsq: Machine-learning-based genotype imputation quality calibration

Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.

DNA Methylation Arrays Processing And Quality-Control

This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.

R Markdown report for building the Data Quality and Progress Report for the baseline household survey of the TIPTOP project.

A Shiny app for PMX QC

This repository is associated with a bioRxiv preprint describing the MacCoss laboratory's quality control measures for sample preparation, system suitability, and assessing results.

Aggregation of QC metrics and outlier nomination for multi-sample studies

Spatially-aware quality control for spatial transcriptomics

Centralised and Automated RepOrting Tools