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Nov 13, 2019 - Nextflow
reproducible-research
Here are 14 public repositories matching this topic...
Projet de Hackathon du master AMI2B 2022 - Pipeline d'analyse RNA-Seq écrit en Nextflow
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Jan 19, 2024 - Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome, whole exome, or targeted sequencing with high performance computing.
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Jan 23, 2019 - Nextflow
Variant calling nextflow pipeline for Grapedia " Tinkering with GRAPEDIA Training School: a modern take on grapevine data analysis" (DATE: 26-28 June 2023 VENUE: FEM | Fondazione Edmund Mach, Via E. Mach 1, 38098 San Michele all’Adige, Trento, Italy)
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Jun 20, 2023 - Nextflow
A demonstration of how to work reproducibly using version control, containers, and a workflow manager.
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Feb 23, 2024 - Nextflow
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
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Oct 15, 2020 - Nextflow
Reproducible evaluation of short read mappers
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Mar 19, 2022 - Nextflow
An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.
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May 22, 2024 - Nextflow
Personal template for making and describing how to do reproducible NBIS support projects
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Feb 16, 2024 - Nextflow
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
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Jun 30, 2024 - Nextflow
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
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Jun 10, 2024 - Nextflow
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
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Jul 9, 2024 - Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
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Jan 27, 2020 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Jul 11, 2024 - Nextflow
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