In this repository, I try to replicate the results of Rodriguez2017
-
Updated
Jun 18, 2022 - Shell
In this repository, I try to replicate the results of Rodriguez2017
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
This repository contains all the scripts necessary to perform RNA-Seq analysis on HTC CRC Pitt.
An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.
Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Tool to identify chimeric events from RNA-Seq data
In development scripts for EvolOMICs group's NGS Data Analysis Pipeline
Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.
Automated RNA-seq pipeline for lncRNA indentification
Add a description, image, and links to the rna-seq-pipeline topic page so that developers can more easily learn about it.
To associate your repository with the rna-seq-pipeline topic, visit your repo's landing page and select "manage topics."