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Sep 26, 2019 - Shell
rna-seq-pipeline
Here are 13 public repositories matching this topic...
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
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Aug 28, 2020 - Shell
An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.
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Dec 22, 2020 - Shell
In development scripts for EvolOMICs group's NGS Data Analysis Pipeline
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Apr 19, 2021 - Shell
This repository contains all the scripts necessary to perform RNA-Seq analysis on HTC CRC Pitt.
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Aug 15, 2021 - Shell
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Aug 25, 2021 - Shell
In this repository, I try to replicate the results of Rodriguez2017
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Jun 18, 2022 - Shell
Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.
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Oct 31, 2022 - Shell
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
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Oct 16, 2023 - Shell
Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.
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Oct 31, 2023 - Shell
Automated RNA-seq pipeline for lncRNA indentification
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Nov 6, 2023 - Shell
Tool to identify chimeric events from RNA-Seq data
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Jul 19, 2024 - Shell
RNA Sequencing pipeline on Cardiff University Hawk using NF-Core with example data.
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Jul 20, 2024 - Shell
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