R Package for Codon Usage Bias Analysis
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Updated
Jul 5, 2024 - R
R Package for Codon Usage Bias Analysis
R library for visualizing (social science) sequence data using ggplot2
🧬 Toolkit for generating various numerical features of protein sequences
Explore amino acid patterns in biological sequences with this R repository. Utilizing stringr, mmand, and ape libraries, it offers spatial analysis functionalities including pattern recognition, frequency analysis, and phylogenetic tree construction. Dive into documentation for usage guidance.
Analysis of the professional trajectories of politicians
seqArchR: Identifying (promoter) sequence architectures de novo using NMF
Mixtures of Exponential-Distance Models for Clustering Longitudinal Life-Course Sequences with Gating Covariates and Sampling Weights
Repository for the paper "Dotplots und Sequenzanalysen als Untersuchungsinstrumente für Überlieferungsgemeinschaften am Beispiel von Priameln"
Using sequence and cluster analysis to analyse change over time in fuel poverty estimates.
WINEPI Episode Mining algorithm for R based on Python implementation by duytri and nkmrtty
Serine Recombinase-Assisted Genome Engineering - Relative Transcriptional Profiling (SAGE-RTP)
Analysis of input alphabet sequential data
R package for EDA and unsupervised learning of categorical sequence data
Project for NYU Multilevel Practicum and sequence study
Code for the analysis and figures for the paper: Manguy J, Shields DC. Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles. Royal Society Open Science. 2019 Oct 16;6(10):190939. Available from: https://royalsocietypublishing.org/doi/10.1098/rsos.190939
Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs
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