Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
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Updated
May 21, 2024 - Python
Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
A streamlined Oxford Nanopore Viral Metagenomics Pipeline
Lesson about containers for HPC with focus on Apptainer.
LXM3: XManager launch backend for HPC clusters
orchestration for singularity containers (under development)
Clinical Whole Genome and Exome Sequencing Pipeline
Physics-Informed Neural Network, Finite Element Method enhanced neural network, and FEM data-based neural network
A rapid pipeline for targeted ONT monkeypox sequencing
An awesome microRNA-sequencing pipeline
singularity environment manager (application to NGS and bioinformatics)
[CVPR 2024] Tackling the Singularities at the Endpoints of Time Intervals in Diffusion Models
Just a list of Singularity definition files maintained by the Biomed Applications Group
A comprehensive quality-control and quantification RNA-seq pipeline
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Scripts to synchronize Singularity images to a CVMFS repository.
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
The Zavolab Automated RNA-seq Pipeline
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