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mirdeep2

Here are 4 public repositories matching this topic...

bixBeta / TReX

RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX

ggplot2 shiny rnaseq multiqc star bash-script shiny-apps bash-scripting 10xgenomics singlecell smallrna mirdeep2 scrna smallrna-seq seurat

Updated Mar 27, 2024
Shell

Brochado-Kith / MicroRNA_pipeline

This is a pipeline for microRNA extraction from raw sequences

shell mapping slurm human trimming bash-script raw-data mirdeep2 quantifying mirnas microarns

Updated Mar 6, 2024
Shell

Drmirdeep / mirdeep2_patch

Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

data analysis mapping sequencing prediction small rna patch quantification mirna smallrna mirdeep microrna mirdeep2

Updated Oct 8, 2021
Perl

OpenOmics / mir-seek

An awesome microRNA-sequencing pipeline

snakemake singularity mirna mirdeep2 mirna-seq micro-rna micro-rna-expression mature-mirna

Updated Oct 1, 2024
Python

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