A header-only templated C++17-library for fast and versatile sequence alignment computations.
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Updated
Feb 28, 2020 - C++
A header-only templated C++17-library for fast and versatile sequence alignment computations.
NodeJs implementation of Smith-Waterman- and Needleman-Wunsch-Algorithm for Arrays of Objects
aligning DNA and protein sequences using dynamic programming
🧬 Distributing Local Sequence Alignment using Volunteer Computing
A compilation of all the programs in my bioinformatics course
The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment
A C++ implementation of the Smith - Waterman algorithm. The system consists of 3 different implementations: the one is sequential, while the other two parallelize the execution in a coarse and a fine level respectively, with the use of multithreading.
A parallel implementation of Smith-Waterman algorithm for determining similar regions between two strings of nucleic acid sequences or protein sequences.
Implementations of Needleman-Wunsch (global alignment) and Smith-Waterman (local alignment) algorithms using Python.
A Go implementation of the Smith–Waterman algorithm
Bio Informatics Lecture Notes @ Faculty of computer and information Sciences ' MU ' for the '4th Year' IT Department
Implement parallel Smith Waterman algorithm on CUDA
AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.
MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.
Bio informatics course materials for NEUB students.
R package for global alignment between two genomic sequences
Longest Common Subsequence algorithm. Global Alignment is the Needleman Wunsche algorithm and the local alignment is Smith Waterman algorithm
The repository contain directories of projects done during the bioinformatics degree program
Implementing the Smith-Waterman algorithm in Python
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