reproducible research project template for R using Renv and snakemake with an econ application
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Updated
Apr 19, 2022 - R
reproducible research project template for R using Renv and snakemake with an econ application
Snakemake based pipeline for RNA-Seq analysis
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
Bioinformatics Pipeline
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
A Snakemake pipeline for RRBS data analysis
Accompanying analysis code for the FRASER manuscript
zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
SCORE - a consensus tool for detecting differentially expressed genes in bacteria
Creating HPC Workflows using Snakemake
Snakemake workflow to benchmark scRNA-seq data simulators
Snakemake pipeline for benchmarking cell-type deconvolution methods as well as deconvoluting real bulk RNA-seq data with the use of scRNA-seq datasets
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
Scripts and pipeine for Genome_assembly_annotation
A simple and entertaining introduction to Snakemake workflows.
Bioinformatics-pipeline in snakemake.
Simple template for running snakemake with R
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