snakemake
Here are 19 public repositories matching this topic...
git hooks for snakemake pipelines
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Dec 11, 2018 - Shell
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
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Aug 20, 2019 - Shell
Germline Variant Calling Pipeline built in Snakemake
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Feb 18, 2020 - Shell
Demonstration Snakemake workflow for Ronin/AWS Slurm-based auto-scaling cluster
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May 4, 2020 - Shell
A minimal working example of using Snakemake on an HPC running PBS-torque or SLURM.
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Nov 4, 2021 - Shell
pipeline to perform gbs and genetic fitness analysis
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Feb 15, 2022 - Shell
Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler
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Jul 19, 2022 - Shell
Reproducible analysis with R, Python and Snakemake via Conda
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Jun 19, 2023 - Shell
utility for writing the snakemake files with faster iterations.
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May 2, 2024 - Shell
A simple Snakemake profile for Slurm without --cluster-config
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May 17, 2024 - Shell
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