A simple Snakemake profile for Slurm without --cluster-config
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Updated
May 17, 2024 - Shell
A simple Snakemake profile for Slurm without --cluster-config
Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler
Germline Variant Calling Pipeline built in Snakemake
A minimal working example of using Snakemake on an HPC running PBS-torque or SLURM.
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
Demonstration Snakemake workflow for Ronin/AWS Slurm-based auto-scaling cluster
utility for writing the snakemake files with faster iterations.
git hooks for snakemake pipelines
pipeline to perform gbs and genetic fitness analysis
Reproducible analysis with R, Python and Snakemake via Conda
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