GTASSIST: Objective evaluation measures of genetic marker selection in SNP genotyping (2008-02-05)
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Updated
Sep 9, 2015 - MATLAB
GTASSIST: Objective evaluation measures of genetic marker selection in SNP genotyping (2008-02-05)
Extracting disease-gene associations from the GWAS Catalog
Python wrapper and web-server for Ensembl VEP
RADtyping: a user-defined perl procedure for performing de novo RAD genotyping in mapping populations.
Implement R-prime measure of linkage disequilibrium
A command line tool to annotate SNPs including p-value estimation about there clinical significance
Calculates Additive and Dominance Relationship Matrices
utility scripts for metagenomics, RNAseq etc. reads processing.
Fast and accurate single sample SNV caller
Predictive marker discovery for groups; binary data, genomic data (single nucleotide variants), arbitrary character data.
📡 Touchstone file to javascript object conversion library
Warehousing DbSNP's JSON Data into PostgreSQL
A QC pipeline for SVs calls based on coverage and SNP calls
Galaxy For Life Science - SNiPlay
Galaxy container with the Sniplay workflow for exploration and large scale analyses of SNP polymorphisms (filtering, density, vcftools, diversity, linkage disequilibrium, population structure).
Linkage disequilibrium test tool to analyse all non-monomorphic single nucleotide polymorphisms
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