Validate SV with Split-Reads
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Updated
Jun 26, 2017 - C++
Validate SV with Split-Reads
Processing and annotation of somatic structural variants
Identify split reads in given chromosomal regions
Validate SVs with CIGAR Strings
A Framework to call Structural Variants from NGS based datasets
My lab book for current project: Identifying structural variation in WGS data
Structural Variants in cell-free tumor DNA
Alignment frontend for AliTV
A QC pipeline for SVs calls based on coverage and SNP calls
Fragment-Aware Local Assembly for Short-reads
Detection of inversions in P. falciparum from long read assemblies.
A de novo genome breakpoint sequence assembly algorithm
Guide to installing, using, and interpreting structural variant finders. Includes example scripts for running tools on UCLA's Hoffman2 and a description of how to use the machine learning combination method FusorSV.
CMSC 191 - Implementation of the structural variant visualization using D3.js and jQuery
A method for variant graph genotyping based on exact alignment of k-mers
Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments
Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as part of the i2QTL consortium. This data set consists of sequencing data from the iPSCORE (Frazer lab) and HipSci projects.
basepair bio: a single binary with many useful genomics subtools.
Using Convolutional Neural Networks to model an association between a genomic sequence and the number of sequenced reads that align to it
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