Repositório para apresentação de código desenvolvido pelo grupo 2 para a UC Algoritmos Avançados para a Bioinformática do Mestrado em Bioinformática, ano lectivo 23-24.
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Updated
Jun 12, 2024 - Python
Repositório para apresentação de código desenvolvido pelo grupo 2 para a UC Algoritmos Avançados para a Bioinformática do Mestrado em Bioinformática, ano lectivo 23-24.
Python package for lexicon; Trie and DAWG implementation.
A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.
Ukkonen's suffix tree algorithm, a complete version implemented in Python
Substring Frequency Count using SuffixTree
A discrete maths project focusing on suffix trees
Tells you which "words" can be written as a publicly available domain
Algorithms and Data Structures
Suffix trees via Ukkonen's algorithm, as described by Gusfield
An assortment of scripts for parsing and understanding genetic code strings.
Various algorithms and data structures on strings
Note Sequence and Arrangement Classifier
Sternum is a python package to map next generation sequencing reads to a reference genome using optimized methods
My solutions to problems of Code Jam 2021.
Python implementation of Suffix Trees and Generalized Suffix Trees.
Algorithms code that I have worked on in Advanced Algorithm and Data Structure course in Monash Malaysia.
A Python implementation of suffix tree
The research of accuracy of searching cycles methods in symbolic sequences (time series) with presence of random noises.
Quick and Dirty implemetation of Google Instant Like Suggestions using Suffix Tree
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