General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
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Updated
Jan 26, 2024 - R
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
Picotti lab data analysis package.
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
A package to perform Random Walk with Restart on different types of networks
Back-end interface for PANDORA https://github.com/genular/pandora
IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems
🍸R version of SConES, a systems-biology approach to GWAS.
R package for de novo pathway enrichment using KeyPathwayMiner
A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.
SynergyFinder R package development
Arabidopsis Thaliana TRanscriptionAl Circadian neTwORk, a web based tool developed using the R package shiny for the exploration and analysis of a transcriptional network in Arabidopsis thaliana constituted by circadian and light responsive transcriptional factors and regulators
Analyze enzyme regulation with metabolome data.
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
Code for my Bioinformatics and Computational Biology MSc Thesis
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
Method for aligning biological replicate data
A comprehensive repository housing all assignments, original code, projects, and educational materials pertaining to the elective course in Systems Biology.
iLipidome is a novel lipidomic data analysis framework.
Accessory R functions to support DBSolveOptimum
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