zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.

Single Cell RNA-seq UMI Filtering Facilitator

R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.

Single Cell RNA-seq UMI Filtering Facilitator

Single Cell RNA-seq UMI Filtering Facilitator

Documents and scripts for analysis of oligonucleotide synthesis errors.

GPSeq sequencing data analysis pipeline

A framework implementing a new proposed method for UMI deduplication and reads correction. The method works at nucleotide level, taking into account the frequency and the mean quality of each base.