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visium

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nf-core / spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

workflow bioinformatics rna-seq pipeline nextflow image-processing spatial transcriptomics single-cell microscopy st 10x-genomics 10xgenomics nf-core spatial-transcriptomics visium

Updated Oct 26, 2024
Nextflow

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