VMD plugin to calculate and visualize clusters of conformations for a trajectory
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Updated
Oct 24, 2018 - Tcl
VMD plugin to calculate and visualize clusters of conformations for a trajectory
Using VMD and NAMD for molecular dynamics simulation of protein PDB files.
A few useful vmd trajectory analysis scripts
TCL-TK for VMD.
Colorblind-friendly, perceptually uniform palettes for vmd
vmdAssist is a VMD extension with tools that help us edit or create new structures like nanotube and nanotorus.
Display the VMD "dynamic" Field (beta, charge, occupancy, ...)
Rendering 3D-Rashba-Pockets with the help of Julia and VMD
Generate Carbon Nano-Cones using VMD
A script to convert multiple pdb files to a single xyz file using VMD
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