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run: make sure persist is ignoring build cache #1852

@efiop

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@efiop

We should not use build cache if there are any persistent outputs in the stage. Don't forget to put a warning on about it. See Stage.is_cached. Also need to not forget to reflect that in cmd help and our docs.

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    bugDid we break something?p1-importantImportant, aka current backlog of things to do

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