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merged 1 commit into from
Jan 2, 2025
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Bump the python-requirements group across 1 directory with 10 updates #986

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Jan 2, 2025

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Bumps the python-requirements group with 10 updates in the / directory:

Package From To
orjson 3.10.11 3.10.13
pydantic 2.9.2 2.10.4
tqdm 4.67.0 4.67.1
types-pyyaml 6.0.12.20240917 6.0.12.20241230
connected-components-3d 3.20.0 3.22.0
scikit-learn 1.5.2 1.6.0
albumentations 1.4.21 1.4.24
mypy 1.13.0 1.14.1
debugpy 1.8.8 1.8.11
ruff 0.7.4 0.8.4

Updates orjson from 3.10.11 to 3.10.13

Release notes

Sourced from orjson's releases.

3.10.13

Changed

  • Fix compatibility with maturin introducing a breaking change in 1.8.0 and specify a fixed version of maturin. Projects relying on any previous version being buildable from source by end users (via PEP 517) must upgrade to at least this version.

3.10.12

Changed

  • Publish PyPI manylinux i686 wheels.
  • Publish PyPI musllinux i686 and arm7l wheels.
  • Publish PyPI macOS wheels for Python 3.10 or later built on macOS 15.
  • Publish PyPI Windows wheels using trusted publishing.
Changelog

Sourced from orjson's changelog.

3.10.13

Changed

  • Fix compatibility with maturin introducing a breaking change in 1.8.0 and specify a fixed version of maturin. Projects relying on any previous version being buildable from source by end users (via PEP 517) must upgrade to at least this version.

3.10.12

Changed

  • Publish PyPI manylinux i686 wheels.
  • Publish PyPI musllinux i686 and arm7l wheels.
  • Publish PyPI macOS wheels for Python 3.10 or later built on macOS 15.
  • Publish PyPI Windows wheels using trusted publishing.
Commits
  • 504a99b 3.10.13
  • 9a4ef46 Fix maturin breaking change and specify fixed version
  • e5ddb0b 3.10.12
  • ded52a7 Documentation update, compare against stdlib
  • f53ec9f win, musl, i686, macOS 15 artifact jobs
  • 8ece0d4 Fix trusted publishing upload, python3.8 manylinux_2_17
  • See full diff in compare view

Updates pydantic from 2.9.2 to 2.10.4

Release notes

Sourced from pydantic's releases.

v2.10.4 2024-12-18

What's Changed

Packaging

Fixes

New Contributors

Full Changelog: pydantic/pydantic@v2.10.3...v2.10.4

v2.10.3 2024-12-03

What's Changed

Fixes

  • Set fields when defer_build is set on Pydantic dataclasses by @​Viicos in #10984
  • Do not resolve the JSON Schema reference for dict core schema keys by @​Viicos in #10989
  • Use the globals of the function when evaluating the return type for PlainSerializer and WrapSerializer functions by @​Viicos in #11008
  • Fix host required enforcement for urls to be compatible with v2.9 behavior by @​sydney-runkle in #11027
  • Add a default_factory_takes_validated_data property to FieldInfo by @​Viicos in #11034
  • Fix url json schema in serialization mode by @​sydney-runkle in #11035

Full Changelog: pydantic/pydantic@v2.10.2...v2.10.3

v2.10.2 2024-11-26

What's Changed

Fixes

Full Changelog: pydantic/pydantic@v2.10.1...v2.10.2

... (truncated)

Changelog

Sourced from pydantic's changelog.

v2.10.4 (2024-12-18)

GitHub release

What's Changed

Packaging

Fixes

New Contributors

v2.10.3 (2024-12-03)

GitHub release

What's Changed

Fixes

  • Set fields when defer_build is set on Pydantic dataclasses by @​Viicos in #10984
  • Do not resolve the JSON Schema reference for dict core schema keys by @​Viicos in #10989
  • Use the globals of the function when evaluating the return type for PlainSerializer and WrapSerializer functions by @​Viicos in #11008
  • Fix host required enforcement for urls to be compatible with v2.9 behavior by @​sydney-runkle in #11027
  • Add a default_factory_takes_validated_data property to FieldInfo by @​Viicos in #11034
  • Fix url json schema in serialization mode by @​sydney-runkle in #11035

v2.10.2 (2024-11-25)

GitHub release

What's Changed

Fixes

  • Only evaluate FieldInfo annotations if required during schema building by @​Viicos in #10769

... (truncated)

Commits

Updates tqdm from 4.67.0 to 4.67.1

Release notes

Sourced from tqdm's releases.

tqdm v4.67.1 stable

  • fix gui (matplotlib syntax) (#1629)
  • misc test & framework updates
    • bump pytest-asyncio (#1630)
    • fix codecov rate limit
    • fix pybuild
    • sync dependencies
Commits

Updates types-pyyaml from 6.0.12.20240917 to 6.0.12.20241230

Commits

Updates connected-components-3d from 3.20.0 to 3.22.0

Commits
  • c96de05 release(3.22.0): adds between thresholding to dust
  • e4b6934 ci: add testing for py313
  • c72b8b4 docs: make threshold text more consistent
  • a7e2946 feat(dust): add between thresholds denoted (lower,upper)
  • f58a882 fix+test(dust): invert was not actually called
  • 147f543 perf(dust): don't need to copy precomputed ccl
  • 15382f8 release(3.21.0): faster dust w/ invert and precomputed_ccl options
  • 66be8de perf(dust): multiply operation was more expensive than assignment
  • 160f877 feat+perf(dust): add invert option and simplify operations
  • 7bbe003 test: check fast path for dust
  • Additional commits viewable in compare view

Updates scikit-learn from 1.5.2 to 1.6.0

Release notes

Sourced from scikit-learn's releases.

Scikit-learn 1.6.0

We're happy to announce the 1.6.0 release.

You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_6_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.6.html

This version supports Python versions 3.9 to 3.13 and features an experimental support of free-threaded CPython.

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn
Commits

Updates albumentations from 1.4.21 to 1.4.24

Release notes

Sourced from albumentations's releases.

Albumentations 1.4.24 Release Notes

  • Support Our Work
  • Core
  • Transforms
  • Bugfixes

Support Our Work

  1. Help Us Grow - If you find value in Albumentations, consider becoming a sponsor. Every contribution, no matter the size, helps us maintain and improve the library for everyone.
  2. Show Your Support - If you enjoy using Albumentations, consider giving us a ⭐ on GitHub. It helps others discover the library and motivates our team.
  3. Join Our Community - Have suggestions or ran into issues? We welcome your input! Share your experience in our GitHub issues or connect with us on Discord.

Core

  • Added new keypoints format xyz for ImageOnly and Dual transforms (z coordinate stays unchanged)

Transforms

New transform AtLeastOneBBoxRandomCrop

Crop an area from image while ensuring at least one bounding box is present in the crop.

by @​guillaume-rochette-oxb

Improvements

  • SmallestMaxSize: Added option for separate max_size for height/width
  • LongestMaxSize: Added option for separate max_size for height/width
  • Added keypoints support to: CenterCrop3D, CoarseDropout3D, CubicSymmetry, Pad3D, PadIfNeeded3D, RandomCrop3D (by @​ternaus)

Bugfixes

Albumentations 1.4.23 Release Notes

  • Support Our Work
  • Core
  • Transforms
  • Bugfixes

Support Our Work

  1. Help Us Grow - If you find value in Albumentations, consider becoming a sponsor. Every contribution, no matter the size, helps us maintain and improve the library for everyone.
  2. Show Your Support - If you enjoy using Albumentations, consider giving us a ⭐ on GitHub. It helps others discover the library and motivates our team.
  3. Join Our Community - Have suggestions or ran into issues? We welcome your input! Share your experience in our GitHub issues or connect with us on Discord.

Core

Target images as numpy array

Now supports numpy arrays with shape (num_images, height, width, num_channels) or (num_images, height, width) as images in Compose

  • Ideal for video processing applications
  • Same transform applies to all images in the array

... (truncated)

Commits

Updates mypy from 1.13.0 to 1.14.1

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next release

Drop Support for Python 3.8

Mypy no longer supports running with Python 3.8, which has reached end-of-life. When running mypy with Python 3.9+, it is still possible to type check code that needs to support Python 3.8 with the --python-version 3.8 argument. Support for this will be dropped in the first half of 2025!

Contributed by Marc Mueller (PR 17492).

Mypyc accelerated mypy wheels for aarch64

Mypy can compile itself to C extension modules using mypyc. This makes mypy 3-5x faster than if mypy is interpreted with pure Python. We now build and upload mypyc accelerated mypy wheels for manylinux_aarch64 to PyPI, making it easy for users on such platforms to realise this speedup.

Contributed by Christian Bundy (PR mypy_mypyc-wheels#76)

--strict-bytes

By default, mypy treats an annotation of bytes as permitting bytearray and memoryview. PEP 688 specified the removal of this special case. Use this flag to disable this behavior. --strict-bytes will be enabled by default in mypy 2.0.

Contributed by Ali Hamdan (PR 18137) and Shantanu Jain (PR 13952).

Improvements to partial type handling in loops

This change results in mypy better modelling control flow within loops and hence detecting several issues it previously did not detect. In some cases, this change may require use of an additional explicit annotation of a variable.

Contributed by Christoph Tyralla (PR 18180).

(Speaking of partial types, another reminder that mypy plans on enabling --local-partial-types by default in mypy 2.0).

Mypy 1.14

We’ve just uploaded mypy 1.14 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

... (truncated)

Commits

Updates debugpy from 1.8.8 to 1.8.11

Release notes

Sourced from debugpy's releases.

debugpy v1.8.11

Full Changelog: microsoft/debugpy@v1.8.9...v1.8.11

Fixes for:

debugpy v1.8.9

Fixes for:

Commits
  • 34cc53b Merge pull request #1779 from microsoft/remove_bytecode_distinfo
  • a99d933 Remove bytecode distinfo causing PyPi publish errors and ignore it from now on
  • 5014f25 Properly update pydevd._settrace.called (#1751)
  • 43f4102 Make sure attach binaries are built before running tox (#1753)
  • a78e5c2 Fix path modification for windows filesystems that can't handle .. (#1752)
  • 3823aba Fix problem with lineno being none when generating traceback (#1750)
  • f4ba976 Subrepo command wasn't checked in correctly (#1737)
  • 73be8fb Takes some changes from pydevd to fix line numbers being None (#1734)
  • See full diff in compare view

Updates ruff from 0.7.4 to 0.8.4

Release notes

Sourced from ruff's releases.

0.8.4

Release Notes

Preview features

  • [airflow] Extend AIR302 with additional functions and classes (#15015)
  • [airflow] Implement moved-to-provider-in-3 for modules that has been moved to Airflow providers (AIR303) (#14764)
  • [flake8-use-pathlib] Extend check for invalid path suffix to include the case "." (PTH210) (#14902)
  • [perflint] Fix panic in PERF401 when list variable is after the for loop (#14971)
  • [perflint] Simplify finding the loop target in PERF401 (#15025)
  • [pylint] Preserve original value format (PLR6104) (#14978)
  • [ruff] Avoid false positives for RUF027 for typing context bindings (#15037)
  • [ruff] Check for ambiguous pattern passed to pytest.raises() (RUF043) (#14966)

Rule changes

  • [flake8-bandit] Check S105 for annotated assignment (#15059)
  • [flake8-pyi] More autofixes for redundant-none-literal (PYI061) (#14872)
  • [pydocstyle] Skip leading whitespace for D403 (#14963)
  • [ruff] Skip SQLModel base classes for mutable-class-default (RUF012) (#14949)

Bug

  • [perflint] Parenthesize walrus expressions in autofix for manual-list-comprehension (PERF401) (#15050)

Server

  • Check diagnostic refresh support from client capability which enables dynamic configuration for various editors (#15014)

Contributors

... (truncated)

Changelog

Sourced from ruff's changelog.

0.8.4

Preview features

  • [airflow] Extend AIR302 with additional functions and classes (#15015)
  • [airflow] Implement moved-to-provider-in-3 for modules that has been moved to Airflow providers (AIR303) (#14764)
  • [flake8-use-pathlib] Extend check for invalid path suffix to include the case "." (PTH210) (#14902)
  • [perflint] Fix panic in PERF401 when list variable is after the for loop (#14971)
  • [perflint] Simplify finding the loop target in PERF401 (#15025)
  • [pylint] Preserve original value format (PLR6104) (#14978)
  • [ruff] Avoid false positives for RUF027 for typing context bindings (#15037)
  • [ruff] Check for ambiguous pattern passed to pytest.raises() (RUF043) (#14966)

Rule changes

  • [flake8-bandit] Check S105 for annotated assignment (#15059)
  • [flake8-pyi] More autofixes for redundant-none-literal (PYI061) (#14872)
  • [pydocstyle] Skip leading whitespace for D403 (#14963)
  • [ruff] Skip SQLModel base classes for mutable-class-default (RUF012) (#14949)

Bug

  • [perflint] Parenthesize walrus expressions in autofix for manual-list-comprehension (PERF401) (#15050)

Server

  • Check diagnostic refresh support from client capability which enables dynamic configuration for various editors (#15014)

0.8.3

Preview features

  • Fix fstring formatting removing overlong implicit concatenated string in expression part (#14811)
  • [airflow] Add fix to remove deprecated keyword arguments (AIR302) (#14887)
  • [airflow]: Extend rule to include deprecated names for Airflow 3.0 (AIR302) (#14765 and #14804)
  • [flake8-bugbear] Improve error messages for except* (B025, B029, B030, B904) (#14815)
  • [flake8-bugbear] itertools.batched() without explicit strict (B911) (#14408)
  • [flake8-use-pathlib] Dotless suffix passed to Path.with_suffix() (PTH210) (#14779)
  • [pylint] Include parentheses and multiple comparators in check for boolean-chained-comparison (PLR1716) (#14781)
  • [ruff] Do not simplify round() calls (RUF046) (#14832)
  • [ruff] Don't emit used-dummy-variable on function parameters (RUF052) (#14818)
  • [ruff] Implement if-key-in-dict-del (RUF051) (#14553)
  • [ruff] Mark autofix for RUF052 as always unsafe (#14824)
  • [ruff] Teach autofix for used-dummy-variable about TypeVars etc. (RUF052) (#14819)

Rule changes

  • [flake8-bugbear] Offer unsafe autofix for no-explicit-stacklevel (B028) (#14829)
  • [flake8-pyi] Skip all type definitions in string-or-bytes-too-long (PYI053) (#14797)
  • [pyupgrade] Do not report when a UTF-8 comment is followed by a non-UTF-8 one (UP009) (#14728)

... (truncated)

Commits
  • 3bb0dac Bump version to 0.8.4 (#15064)
  • 40cba5d [red-knot] Cleanup various todo_type!() messages (#15063)
  • 596d80c [perflint] Parenthesize walrus expressions in autofix for `manual-list-comp...
  • d8b9a36 Disable actionlint hook by default when running pre-commit locally (#15061)
  • 85e71ba [flake8-bandit] Check S105 for annotated assignment (#15059)
  • 2802cbd Don't special-case class instances in unary expression inference (#15045)
  • ed2bce6 [red-knot] Report invalid exceptions (#15042)
  • f0012df Fix typos in RUF043.py (#15044)
  • 0fc4e8f Introduce InferContext (#14956)
  • ac81c72 [ruff] Ambiguous pattern passed to pytest.raises() (RUF043) (#14966)
  • Additional commits viewable in compare view

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@dependabot
Bump the python-requirements group across 1 directory with 10 updates
4d023d1 
Bumps the python-requirements group with 10 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [orjson](https://github.com/ijl/orjson) | `3.10.11` | `3.10.13` |
| [pydantic](https://github.com/pydantic/pydantic) | `2.9.2` | `2.10.4` |
| [tqdm](https://github.com/tqdm/tqdm) | `4.67.0` | `4.67.1` |
| [types-pyyaml](https://github.com/python/typeshed) | `6.0.12.20240917` | `6.0.12.20241230` |
| [connected-components-3d](https://github.com/seung-lab/connected-components-3d) | `3.20.0` | `3.22.0` |
| [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.5.2` | `1.6.0` |
| [albumentations](https://github.com/albumentations-team/albumentations) | `1.4.21` | `1.4.24` |
| [mypy](https://github.com/python/mypy) | `1.13.0` | `1.14.1` |
| [debugpy](https://github.com/microsoft/debugpy) | `1.8.8` | `1.8.11` |
| [ruff](https://github.com/astral-sh/ruff) | `0.7.4` | `0.8.4` |



Updates `orjson` from 3.10.11 to 3.10.13
- [Release notes](https://github.com/ijl/orjson/releases)
- [Changelog](https://github.com/ijl/orjson/blob/master/CHANGELOG.md)
- [Commits](ijl/orjson@3.10.11...3.10.13)

Updates `pydantic` from 2.9.2 to 2.10.4
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.9.2...v2.10.4)

Updates `tqdm` from 4.67.0 to 4.67.1
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](tqdm/tqdm@v4.67.0...v4.67.1)

Updates `types-pyyaml` from 6.0.12.20240917 to 6.0.12.20241230
- [Commits](https://github.com/python/typeshed/commits)

Updates `connected-components-3d` from 3.20.0 to 3.22.0
- [Release notes](https://github.com/seung-lab/connected-components-3d/releases)
- [Changelog](https://github.com/seung-lab/connected-components-3d/blob/master/ChangeLog)
- [Commits](seung-lab/connected-components-3d@3.20.0...3.22.0)

Updates `scikit-learn` from 1.5.2 to 1.6.0
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.5.2...1.6.0)

Updates `albumentations` from 1.4.21 to 1.4.24
- [Release notes](https://github.com/albumentations-team/albumentations/releases)
- [Commits](albumentations-team/albumentations@1.4.21...1.4.24)

Updates `mypy` from 1.13.0 to 1.14.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.13.0...v1.14.1)

Updates `debugpy` from 1.8.8 to 1.8.11
- [Release notes](https://github.com/microsoft/debugpy/releases)
- [Commits](microsoft/debugpy@v1.8.8...v1.8.11)

Updates `ruff` from 0.7.4 to 0.8.4
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.7.4...0.8.4)

---
updated-dependencies:
- dependency-name: orjson
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: pydantic
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: tqdm
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: types-pyyaml
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: connected-components-3d
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: scikit-learn
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: albumentations
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: debugpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: ruff
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Jan 1, 2025
@dependabot dependabot bot requested review from JBWilkie and saurbhc January 1, 2025 05:09
@JBWilkie JBWilkie merged commit 9e228f9 into master Jan 2, 2025
20 checks passed
@dependabot dependabot bot deleted the dependabot/pip/python-requirements-697f34e1bb branch January 2, 2025 14:04
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@saurbhc saurbhc Awaiting requested review from saurbhc

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