This code performs preprocessing of wide-field calcium imaging in mice, designed for use by the Ebner Lab at the University of Minnesota. These techniques are used in a peer-reviewed scientific article.
The entire pipleine should be run from the pipeline_preprocessing.m script in the Control Scripts folder. This pipeline also requires downloading code from the code_common_to_pipelines repository.
This code calls on code created by other programmers, including dftregistration, PolyDraw, and an altered version of tiffread2. Credit belongs to the original creators of each part of this code, and should be cited accordingly.
This respository is a work in progress. For questions, problems, or concerns, please email Sarah West at west0883@umn.edu.
Please cite use of this code in any resulting projects or publications as:
West, SL. (2021). MATLAB Wide-field calcium imaging preprocessing pipeline code. Accessed [date accessed]. https://github.com/west0883/preprocessing_pipeline_code