yt_astro_analysis-1.1.3

What's Changed

• MNT: bump dev version by @neutrinoceros in #173
• MNT: bump github action versions by @neutrinoceros in #174
• TST: upgrade all Python versions in tests by @neutrinoceros in #176
• BLD: migrate metadata to pyproject.toml, and drop setup.cfg by @neutrinoceros in #175
• STY: upgrade pre-commit hooks, bump minimal version for pyupgrade and reduce auto-upgrade frequency by @neutrinoceros in #177
• BLD: drop dependency on more_itertools by @neutrinoceros in #178
• STY: upgrade black to 23.1.0 by @neutrinoceros in #179
• TST: ensure test dependencies are correctly installed in CI by @neutrinoceros in #184
• MNT: enable dependabot autoupdates for GitHub workflows by @neutrinoceros in #181
• STY: migrate linting to ruff, add basic pre-commit hooks, cleanup .pre-commit-config.yaml by @neutrinoceros in #180
• Bump pypa/cibuildwheel from 2.11.4 to 2.12.0 in /.github/workflows by @dependabot in #185
• BUG: handle deprecation warning from numpy 1.25 (np.product is deprecated in favour of np.prod) by @neutrinoceros in #186
• MNT: upgrade pre-commit hooks, simplify ruff config, update blacken-docs url by @neutrinoceros in #188
• Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.4 in /.github/workflows by @dependabot in #189
• Bump pypa/cibuildwheel from 2.12.0 to 2.12.1 in /.github/workflows by @dependabot in #190
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #191
• Bump pypa/cibuildwheel from 2.12.1 to 2.12.3 in /.github/workflows by @dependabot in #192
• Bump pypa/gh-action-pypi-publish from 1.8.4 to 1.8.5 in /.github/workflows by @dependabot in #193
• DOC: migrate away from configuration key format deprecated in Sphinx 7.0 by @neutrinoceros in #195
• STY: activate flake8-comprehensions (ruff) by @neutrinoceros in #196
• Bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.6 in /.github/workflows by @dependabot in #197
• Bump pypa/cibuildwheel from 2.12.3 to 2.13.0 in /.github/workflows by @dependabot in #198
• TST: treat warnings as errors by @neutrinoceros in #201
• Bump pypa/cibuildwheel from 2.13.0 to 2.13.1 in /.github/workflows by @dependabot in #202
• Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 in /.github/workflows by @dependabot in #203
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #204
• DEP: set upper limit to runtime numpy by @neutrinoceros in #205
• MNT: avoid usage of deprecated unyt API by @neutrinoceros in #207
• DOC: fix RadMC3DWriter's docstring (compat with modern yt) by @neutrinoceros in #206
• MNT: cleanup unused variables by @neutrinoceros in #212
• MNT: cleanup free of uninitialized variable by @neutrinoceros in #213
• Bump pypa/gh-action-pypi-publish from 1.8.7 to 1.8.8 in /.github/workflows by @dependabot in #214
• Bump pypa/cibuildwheel from 2.13.1 to 2.14.1 in /.github/workflows by @dependabot in #215
• BLD: stop building wheels for Windows 32 by @neutrinoceros in #217
• BLD: switch to Cython 3.0, forbid deprecated Numpy C API in generated code by @neutrinoceros in #211
• BLD: add wheels for CPython 3.12 by @neutrinoceros in #216
• BLD: migrate from oldest-supported-numpy to NPY_TARGET_VERSION (Python >= 3.9) by @neutrinoceros in #218
• Bump pypa/gh-action-pypi-publish from 1.8.8 to 1.8.10 in /.github/workflows by @dependabot in #220
• Support installation of rockstar through conda by @cphyc in #219
• DEP: drop support for CPython 3.8 by @neutrinoceros in #222
• Bump actions/checkout from 3 to 4 in /.github/workflows by @dependabot in #223
• BUG: fix usage of deprecated (and removed) clobber argument from astropy by @neutrinoceros in #226
• Updated ppv_cube.py to avoid deprecated function 'update_all_headers' by @spectram in #225
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #230
• Bump pypa/cibuildwheel from 2.15.0 to 2.16.2 in /.github/workflows by @dependabot in #231
• BUG: fix a couple bugs in PPVCube notebook by @neutrinoceros in #228
• DOC: pin doc requirements by @neutrinoceros in #235
• DOC: upgrade sphinx to latest version and enable automated upgrades for doc dependencies by @neutrinoceros in #237
• REL: prep release 1.1.3 by @neutrinoceros in #239

New Contributors

• @dependabot made their first contribution in #185
• @spectram made their first contribution in #225

Full Changelog: yt_astro_analysis-1.1.2...yt_astro_analysis-1.1.3

yt_astro_analysis-1.1.2

This is a bugfix release with no new features. We fixed compatibility with numpy 1.24 and Python 3.11
This release supports CPython 3.8 to 3.11

What's Changed

• Update version and citation. by @brittonsmith in #136
• Update package name for conda/pip installation. by @brittonsmith in #138
• TST: hotfix CI (workaround upstream change of behaviour) by @neutrinoceros in #145
• Increase timeout on data download. by @brittonsmith in #147
• BLD: drop support for CPython 3.7 by @neutrinoceros in #157
• MNT: cleanup unused and outdated requirements file by @neutrinoceros in #164
• BUG: fix compatibility with numpy 1.24 (numpy.float was removed) by @neutrinoceros in #169
• BLD: switch ubuntu image to 20.04 (18.04 image is deprecated) by @neutrinoceros in #167
• BLD: build wheels for Python 3.11 by @neutrinoceros in #170
• TST: test on Python 3.11 by @neutrinoceros in #163
• REL: prep release 1.1.2 by @neutrinoceros in #172

Full Changelog: yt_astro_analysis-1.1.1...yt_astro_analysis-1.1.2

yt_astro_analysis version 1.1.1 is released!

yt_astro_analysis is a yt extension package for astrophysical analysis. This package contains functionality for:

• Halo finding and analysis
• Lightcones
• Planning cosmological simulations for making lightcones and lightrays
• Exporting to the RADMC-3D radiation transport code
• Creating PPV FITS cubes

This is a bugfix release; no new features have been added.

Bugfixes

• Make sure to initialize index before checking particle types #127
• Fix broken example with halo plotting #132
• Make total particles a 64 bit integer #133
• Set output directory properly for rockstar halo finder #134

Full Changelog: yt_astro_analysis-1.1.0...yt_astro_analysis-1.1.1

yt_astro_analysis-1.1.0

yt_astro_analysis version 1.1 is released!

yt_astro_analysis is an extension of yt for astrophysical analysis. This is the first stable release of yt_astro_analysis to be compatible with yt version 4.0 and later.

New Features

• The HaloCatalog has been significantly refactored (#58, #62) with the following additional improvements:
  • the interface to the Rockstar halo finder is now compatible with the latest version of Rockstar Galaxies #55
  • all halo finders now support being run with time-series of datasets
  • halo particle ids now savable with FoF and HOP halo finders #52
  • looping over halos is done with io chunks instead of ds.all_data for a significant speedup and reduction in memory
  • Allow more flexibility for specifying rockstar particle mass #84
  • Add restart option for rockstar #82
  • Adding an outer_radius parameter to the iterative COM callback #34
• Remove the sunyaev_zeldovich analysis module. This is now ytsz. #79
• Drop support for python 3.6 #100, #101

Minor Enhancements and Bugfixes

• significant project management and ci improvements #89, #90, #91, #92, #96, #95, #97, #108, #109
• Add annotate_halos function #98
• only access particle_type field in rockstar if it exists and is needed #111
• fix light cone projections with weight fields #37
• Fix HaloCatalog progress bar #40
• clarify rockstar error message about using the wrong number of MPI processes #42, #113
• check derived_field_list for base fields #43
• allow cosmology splice from a single dataset #49
• Fix iterator #68
• Support new config file format #65
• Enable circleci testing #44
• Add max_box_fraction to plan_cosmology_splice #76
• Fix HaloCatalog output_dir #81
• remove deprecated dm_only keyword from halo finder #57
• update amr_grid.inp #77

New Contributors

• Corentin Cadiou (@cphyc)
• Nathan Goldbaum (@ngoldbaum)
• Meng Yuan Ho (@willsonho2000)
• Cameron Hummels (@chummels)
• Clément Robert (@neutrinoceros)

Full Changelog: yt_astro_analysis-1.0.0...yt_astro_analysis-1.1.0

yt_astro_analysis 1.0 Release

yt_astro_analysis version 1.0 is released!

yt_astro_analysis is an extension of yt for astrophysical analysis. yt_astro_analysis is the new home of yt's analysis_modules. The 1.0 release of yt_astro_analysis is functionally identical to the code in analysis_modules in yt version 3.5.0. After the 3.5 release of yt, analysis_modules was removed and all development transitioned to yt_astro_analysis.

yt_astro_analysis version 1.0 includes:

• Halo finding
• Halo analysis (the HaloCatalog)
• LightCones and CosmologySplices
• RADMC-3D exporting