CLI is working

[Iamsdt]

This pull request introduces several major changes to the Pyagenity API project, focusing on improving packaging, documentation, and development workflow. It removes legacy containerization files, adds a robust Makefile for development and publishing, expands the package manifest, and significantly updates the documentation to clarify usage and features. The example agent and CLI source code are also removed, likely in preparation for refactoring or replacement.

Packaging and Development Workflow Improvements:

• Added a comprehensive Makefile with commands for building, publishing, testing, documentation, and cleaning, streamlining development and release processes.
• Expanded MANIFEST.in to include all essential source files (.py, .json, .yaml, .yml) from pyagenity_api, src, graph, migrations, and scripts directories for more complete packaging.

Documentation and Usage Updates:

• Major rewrite of README.md to clarify installation, CLI usage, configuration, project structure, features, and development workflow. Now includes Makefile usage, manual setup instructions, and improved CLI documentation. [1] [2]

Containerization and Legacy Cleanup:

• Removed the legacy Dockerfile and docker-compose.yml, indicating a shift to a new containerization approach or moving container generation to the CLI. [1] [2]

Source Code Removal/Refactoring:

• Deleted example_weather_agent.py and cli.py, likely in preparation for a new example agent and CLI implementation or to move these features elsewhere. [1] [2]