Branch wise rates (Tb)

Tb Mode - Branch-wise rates

python3 Zombi.py Tb ./Parameters/SpeciesTreeParameters.tsv ./Output_folder

In this mode, speciation and extinction rates are specific for each branch. Each time one new lineage emerges, a new value for its extinction and speciation rates its sampled from a user-defined distribution (uniform, normal or lognormal).

Please mind that if you set your speciation/extinction rates as f:your_rate, the value of the rate will be fixed. To make full use of this mode you should specify your extinction-speciation rates like in the example below:

SPECIATION u:1;4

EXTINCTION u:0.2;1

Output

Besides the files of the basic mode T

Rates.tsv Containing the specific speciation and extinction rates for each branch