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AADavin edited this page Mar 15, 2018 · 28 revisions

The Three main modes of SimuLyon

Generating a Species Tree (T)
Generating a Genomes (G)
Generating sequences (S)

Wiki pages Pages 19

Home
Birth death shift process (Ts)
Branch wise rates (Tb)
Family wise rates (Gm)
Full genome (Gf)
Full genome (Sf)
Generating Genomes
Generating Sequences
Generating Species Trees
Input tree (Ti)
Lineage profiling (Tp)
Massive Extinction event (Tm)
Parameters
Sampling species
Shifting substitution rate (Ss)
Tutorial #1: Generating data to test Molecular Clocks inference
Tutorial #2 Simulating realistic families
User defined rates (Gu)
User defined rates (Su)

Home
Parameters
Generating Species Trees
Generating Genomes
Generating Sequences
Sampling species
Tutorial 1. Testing Molecular Clock
Tutorial 2. Realistic families

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