Home

Introduction

Zombi is a flexible platform of genome evolution written in Python 3.6 that can be used to generate species trees, genomes, gene trees or sequences.

The three main modes

There are three main modes to run Zombi: T (species Tree), G (Genomes) and S (Sequences)

You must run the computations in sequential order. This means that: Computing genomes requires having computed previously a species tree computed with the T mode and computing sequences requires having computed previously genomes with the G mode.

• Generating Species Trees (T)

• Generating Genomes (G)

• Generating a Sequences (S)