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Merge v2023.02.14 into master branch#138

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maiyishan merged 100 commits intomasterfrom
v2023.02.14
Mar 19, 2023
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Merge v2023.02.14 into master branch#138
maiyishan merged 100 commits intomasterfrom
v2023.02.14

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josesho and others added 30 commits July 26, 2021 19:36
test added & small bugs fixed
- add greeting to mini_meta_delta repr
- new class created for delta-delta function
- correction of permutation test (delta-delta)
- minor changes to mini-meta function
- update the display
intext documentation added
Delta delta & mini meta delta amendment
# Conflicts:
#	.gitignore
# Conflicts:
#	.gitignore
#	dabest/_api.py
#	dabest/_classes.py
#	dabest/plotter.py
#	dabest/tests/baseline_images/test_47_cummings_unpaired_delta_delta_meandiff.png
#	dabest/tests/baseline_images/test_48_cummings_sequential_delta_delta_meandiff.png
#	dabest/tests/baseline_images/test_49_cummings_baseline_delta_delta_meandiff.png
#	dabest/tests/baseline_images/test_50_delta_plot_ylabel.png
#	dabest/tests/baseline_images/test_51_delta_plot_change_palette_a.png
#	dabest/tests/baseline_images/test_52_delta_dot_sizes.png
#	dabest/tests/baseline_images/test_53_delta_change_ylims.png
#	dabest/tests/baseline_images/test_54_delta_invert_ylim.png
#	dabest/tests/baseline_images/test_56_delta_cohens_d.png
#	dabest/tests/test_01_effsizes_pvals.py
#	dabest/tests/test_04_repeated_measures_effsizes_pvals.py
#	dabest/tests/test_06_delta-delta_effsize_pvals.py
#	dabest/tests/test_07_delta-delta_plots.py
maiyishan and others added 29 commits March 6, 2023 17:20
Added pre-release announcement for v2023.02.14
Updated showpiece.png (image from readme.md) to have white background
To no longer have transparent background
Removed showraw=true for showpiece.png so the white background actually shows up.
Noted on wishlist features that are implemented in v2023.02.14
to use iris.png from local branch and not the master branch for some reason...
1. classes.py: added MiniMetaDelta, fixed Cohen's h function signatures
2. Added Cohen's h and minimeta function signatures to api.rst
3. Added minimetadelta.rst tutorial page, split repeated measures and plot aesthetics into their own pages
4. Added release notes to release-notes.rst & updated index.rst (landing page)
5. Changed version #s in documentation to v2023.02.14
6. Added upcoming release announcement to README.md, changed pictures to have white backgrounds
1.  added doc string to class DeltaDelta and corrected typos
2. changed delta-delta tests and utils.py to mutant-drug configuration
3. generated test images for delta-delta tests
4. added tutorial page deltadelta.rst to include calculations and example plots
5. modified index.rst to include deltadelta
6. modified api.rst to include deltadelta
7. updated tutorial images for deltadelta
Add error bar for paired proportional plot.

Change a typo in the documentation
This bug is caused by mistake when making Sankey Diagram. The plot group for slopegraph and Sankey Diagram should be different.
Bug fixes and adding features
1. rewrote formulae in _classes.py doc string
2. amendments in the deltadelta.rst
Delta-delta docs amendment
Combine to have error_bar function.
Increase code readability in plotter.py
- Dataset generation was breaking due to misnamed variable; fixed.
- Originally did not ask user to import dabest; fixed.
Removed duplicate "get results of statistical tests" messages.
- Thanks @sangyu for making changes in delta-delta documentation and corresponding API signatures.

- Add line breaks for visual effect on tutorial pages.

- Add notes for median difference in the documentation
Fixes code in API page for mini-meta
amend delta2-delta1
Documentation, bug fixes and code readability
@maiyishan maiyishan merged commit c79cdb2 into master Mar 19, 2023
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6 participants