Skip to content
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
103 commits
Select commit Hold shift + click to select a range
a817956
del all files from main branch
ZHANGROU-99 Mar 5, 2023
440d087
add api and tut, also change package name
ZHANGROU-99 Mar 5, 2023
ddb4262
del end-to-end
ZHANGROU-99 Mar 5, 2023
d922e1c
del index.qmd.py
ZHANGROU-99 Mar 5, 2023
653ec74
after git status -s
ZHANGROU-99 Mar 11, 2023
713c05a
add requirements in settings
ZHANGROU-99 Mar 11, 2023
3bcaa52
add basics
ZHANGROU-99 Mar 11, 2023
d3471f9
run nbdev_export
ZHANGROU-99 Mar 11, 2023
73c3e8b
update ipynb files
ZHANGROU-99 Mar 11, 2023
dc61b6a
modify errors
ZHANGROU-99 Mar 11, 2023
fcd0288
deal with warnings
ZHANGROU-99 Mar 11, 2023
35dd5c7
warnings
ZHANGROU-99 Mar 11, 2023
0002d53
groupby
ZHANGROU-99 Mar 11, 2023
99e9782
export
ZHANGROU-99 Mar 11, 2023
3063a59
change plotter
ZHANGROU-99 Mar 11, 2023
9082efd
modify kwargs
ZHANGROU-99 Mar 11, 2023
3644f20
modify class
ZHANGROU-99 Mar 12, 2023
7a6fe8a
modify plotter
ZHANGROU-99 Mar 12, 2023
25e8799
try
ZHANGROU-99 Mar 12, 2023
f7e1e39
del repeated
ZHANGROU-99 Mar 12, 2023
fa522b2
test repeated
ZHANGROU-99 Mar 12, 2023
ed02459
add repeated tut
ZHANGROU-99 Mar 12, 2023
7467490
test
ZHANGROU-99 Mar 19, 2023
11b6249
deltadelta tut
ZHANGROU-99 Mar 19, 2023
d40b4a8
change name of confint_2group_diff
ZHANGROU-99 Mar 19, 2023
d321cd4
udate api
ZHANGROU-99 Mar 19, 2023
78d6f9d
update _api
ZHANGROU-99 Mar 19, 2023
fd51f6b
run nbdev_clean
ZHANGROU-99 Mar 19, 2023
48ddd48
update _class.py
ZHANGROU-99 Mar 19, 2023
0029777
update other notebooks
ZHANGROU-99 Mar 19, 2023
968d3ed
add import numpy in plot_tools
ZHANGROU-99 Mar 19, 2023
50564a1
add import collections
ZHANGROU-99 Mar 19, 2023
6c58904
modify plot_tools
ZHANGROU-99 Mar 19, 2023
1cb1a14
add tutorials
ZHANGROU-99 Mar 19, 2023
d7631f1
add all tuts
ZHANGROU-99 Mar 19, 2023
d3ff450
modify readme
ZHANGROU-99 Mar 19, 2023
f3b1864
add tests files
ZHANGROU-99 Mar 21, 2023
d8384bd
see whether automatic test
ZHANGROU-99 Mar 21, 2023
8230d78
modify test.yaml
ZHANGROU-99 Mar 21, 2023
4510ece
modify action.yml
ZHANGROU-99 Mar 21, 2023
2e51c17
rename to master
ZHANGROU-99 Mar 21, 2023
8b2198d
add pytest
ZHANGROU-99 Mar 21, 2023
e264753
add lqrt in settings
ZHANGROU-99 Mar 21, 2023
08419aa
del space after fi in yml file
ZHANGROU-99 Mar 21, 2023
a39e1cd
del fi in yml file
ZHANGROU-99 Mar 21, 2023
78b2711
add pytest in yml
ZHANGROU-99 Mar 21, 2023
ed5512b
del one pic to see if pytest really works
ZHANGROU-99 Mar 21, 2023
d7878d3
see if pytest work in yml
ZHANGROU-99 Mar 21, 2023
dc2d3a5
add install pytest -mpl
ZHANGROU-99 Mar 21, 2023
13c053a
change pytest.ini
ZHANGROU-99 Mar 21, 2023
f57566c
update baseline_images
ZHANGROU-99 Mar 21, 2023
61302bf
add test-image/yaml
ZHANGROU-99 Mar 21, 2023
0e2bec4
modify yaml
ZHANGROU-99 Mar 21, 2023
175adb6
add install dependencies in yaml
ZHANGROU-99 Mar 21, 2023
1a1a05c
modify yaml
ZHANGROU-99 Mar 21, 2023
5d43f74
add dependencies
ZHANGROU-99 Mar 21, 2023
d0a3b8c
add dependencies into requirements.txt
ZHANGROU-99 Mar 21, 2023
318107c
add statsmodels
ZHANGROU-99 Mar 21, 2023
582a695
add dev_requirements
ZHANGROU-99 Mar 22, 2023
eac1ae2
modify yaml
ZHANGROU-99 Mar 22, 2023
e4cc300
change lqrt version
ZHANGROU-99 Mar 22, 2023
a599840
modify settings
ZHANGROU-99 Mar 22, 2023
a73ca4f
move tests into nbs
ZHANGROU-99 Mar 23, 2023
7232d11
run nbdev_clean and add root_dir in pytest.ini
ZHANGROU-99 Mar 23, 2023
d12d180
move pytest.ini to nbs
ZHANGROU-99 Mar 23, 2023
3c281a9
add package version and solve sidebar issue
ZHANGROU-99 Mar 26, 2023
ef95724
change package version in settings
ZHANGROU-99 Mar 26, 2023
e341315
add blog
ZHANGROU-99 Mar 26, 2023
432c3e6
modify settings
ZHANGROU-99 Mar 26, 2023
098dc71
modify docs and add about and citation
ZHANGROU-99 Mar 26, 2023
7adb093
run nbdev_clean
ZHANGROU-99 Mar 26, 2023
6eeec32
change scipy version
ZHANGROU-99 Mar 26, 2023
46df7b9
modify blog index
ZHANGROU-99 Mar 27, 2023
0fc2454
modify index.ipynb
ZHANGROU-99 Mar 27, 2023
49a0a43
modify api docs
ZHANGROU-99 Mar 30, 2023
a916d47
add from __future__ import annotations
ZHANGROU-99 Mar 30, 2023
cf5ab78
hide show_doc
ZHANGROU-99 Mar 30, 2023
fc9d68a
del show_doc
ZHANGROU-99 Mar 30, 2023
88c5f8f
modify docstrings
ZHANGROU-99 Mar 31, 2023
7373f6b
change hide to export for from __future__ import annotations
ZHANGROU-99 Mar 31, 2023
9a27f7b
move to _stats_tools
ZHANGROU-99 Mar 31, 2023
5ae126d
change imports in tests
ZHANGROU-99 Mar 31, 2023
1bce08b
change import in permutation
ZHANGROU-99 Mar 31, 2023
90a93c4
change import in Permutation class
ZHANGROU-99 Mar 31, 2023
17dee4f
update readme
ZHANGROU-99 Mar 31, 2023
9bc1a60
add import dabest for examples
ZHANGROU-99 Mar 31, 2023
c7ecdb3
nbdev_clean
ZHANGROU-99 Mar 31, 2023
5471c69
plots for readme
ZHANGROU-99 Mar 31, 2023
71fb79f
Updating README.md
maiyishan Apr 1, 2023
8edfa8a
Re-update README.md
maiyishan Apr 1, 2023
c47d827
Revert "Re-update README.md"
maiyishan Apr 1, 2023
2a756d2
Revert "Updating README.md"
maiyishan Apr 1, 2023
b99c75e
Merge branch 'vnbdev' of github.com:ZHANGROU-99/DABEST-python into vn…
ZHANGROU-99 Apr 1, 2023
2919c74
modify init
ZHANGROU-99 Apr 2, 2023
5db985d
Merge branch 'nb' into vnbdev
ZHANGROU-99 Apr 2, 2023
1de4ca3
modify readme
ZHANGROU-99 Apr 5, 2023
1ad9169
Merge branch 'nb' into vnbdev
ZHANGROU-99 Apr 5, 2023
cad89bb
readme amendment
maiyishan Apr 10, 2023
28c5a5f
Revert "readme amendment"
maiyishan Apr 10, 2023
d844da4
readme amendment, push test (again)
maiyishan Apr 10, 2023
0e21f5f
Revert "readme amendment, push test (again)"
maiyishan Apr 10, 2023
011d017
First time trying nbdev, modify _classes.py
Jacobluke- Apr 11, 2023
f51eb68
Update the dabest.load() method. Follow nbdev
Jacobluke- Apr 12, 2023
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 14 additions & 0 deletions .github/workflows/deploy.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,14 @@
name: Deploy to GitHub Pages

permissions:
contents: write
pages: write

on:
push:
branches: [ "main", "master" ]
workflow_dispatch:
jobs:
deploy:
runs-on: ubuntu-latest
steps: [uses: fastai/workflows/quarto-ghp@master]
18 changes: 18 additions & 0 deletions .github/workflows/test-image.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
name: Python pytest
on: [workflow_dispatch, pull_request, push]

jobs:
test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: 3.9
cache: "pip"
cache-dependency-path: settings.ini
- name: Run pytest
run: |
python -m pip install --upgrade pip
pip install .[dev]
pytest nbs/tests/
7 changes: 7 additions & 0 deletions .github/workflows/test.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
name: CI
on: [workflow_dispatch, pull_request, push]

jobs:
test:
runs-on: ubuntu-latest
steps: [uses: fastai/workflows/nbdev-ci@master]
71 changes: 49 additions & 22 deletions .gitignore
Original file line number Diff line number Diff line change
@@ -1,6 +1,21 @@
_docs/
_proc/

*.bak
.gitattributes
.last_checked
.gitconfig
*.bak
*.log
*~
~*
_tmp*
tmp*
tags
*.pkg

# Byte-compiled / optimized / DLL files
__pycache__/
.idea/*
*.py[cod]
*$py.class

Expand All @@ -9,6 +24,7 @@ __pycache__/

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
Expand All @@ -24,7 +40,6 @@ wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
# Usually these files are written by a python script from a template
Expand All @@ -46,16 +61,13 @@ nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
.static_storage/
.media/
local_settings.py

# Flask stuff:
Expand Down Expand Up @@ -83,14 +95,13 @@ celerybeat-schedule
# SageMath parsed files
*.sage.py

# Environments
# dotenv
.env

# virtualenv
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
Expand All @@ -105,20 +116,36 @@ venv.bak/
# mypy
.mypy_cache/

# Add more below here. #
.vscode
*.swp

# osx generated files
.DS_Store
.DS_Store?
.Trashes
ehthumbs.db
Thumbs.db
.idea

# pytest
.pytest_cache

# tools/trust-doc-nbs
docs_src/.last_checked

# symlinks to fastai
docs_src/fastai
tools/fastai

# dev files
dev*
# link checker
checklink/cookies.txt

# DS_Store
*.DS_Store
**/.DS_Store
# .gitconfig is now autogenerated
.gitconfig

# font list
fontList.json
fontList.py3k.cache
fontList-v300.json
# Quarto installer
.deb
.pkg

# tex folders
tex.cache/
.Rproj.user
# Quarto
.quarto
6 changes: 6 additions & 0 deletions .pre-commit-config.yaml.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
repos:
- repo: https://github.com/fastai/nbdev
rev: 2.2.10
hooks:
- id: nbdev_clean
- id: nbdev_export
28 changes: 0 additions & 28 deletions .travis.yml

This file was deleted.

76 changes: 0 additions & 76 deletions CODE_OF_CONDUCT.md

This file was deleted.

23 changes: 0 additions & 23 deletions CONTRIBUTING.md

This file was deleted.

Loading