* `refine` & `stratify`
  * Fixed variant and bed boundary overlapping issue
* general
  * Definition of variants within a region now includes replacement style from TR callers having an anchor base 1bp upstream of catalog/includebed regions
  * Propagating MAFFT errors (#204)
  * FIPS compliance (#205)
  * Allow csi-indexed vcf files (#209)
  * bcftools sort tempfile (#213)