polyomino_integer

run as

./bin/GP_mapper number of [repeated builds] [Determinism threshold (=1)] [Run]

where run is the Nth run of data.

Populate file with genotypes titled Genotype_Inputs_Run[Run].txt with one genotype per line. e.g.

0 0 0 1 0 0 0 2
0 0 1 2
1 3 0 0 2 0 0 4
1 3 0 0 0 2 0 4

And then the output is in Assembly_Outputs_Run[Run].txt, with each Phenotype ID (pid) on its own line.

The pid matches the phenotype as detailed in the PhenotypeTable_Run[Run].txt file.

The phenotypes can be plotted in vis.py with the [Run] and pid tuple, e.g.

plotPhenotype(0,(4,0))
plotPhenotype(0,(2,0))

which plots the two examples from above