Compile failed because of an internal compiler error (object java.lang.Object in compiler mirror not found.); see the error output for details #4 #5
Description
propertyfile] Creating new property file: /Homokaryon-Expression/test_output/run/ara/build/tool.properties
[scalac] Compiling 39 scala and 69 java source files to /Homokaryon-Expression/test_output/run/ara/build
[scalac] error: error while loading package, Missing dependency 'object java.lang.Object in compiler mirror', required by /Homokaryon-Expression/test_output/run/ara/lib_compile/scala-2.10.2/scala-library.jar(scala/package.class)
[scalac] error: error while loading package, Missing dependency 'object java.lang.Object in compiler mirror', required by /Homokaryon-Expression/test_output/run/ara/lib_compile/scala-2.10.2/scala-library.jar(scala/runtime/package.class)
[scalac] scala.reflect.internal.MissingRequirementError: object java.lang.Object in compiler mirror not found.
[scalac] at scala.reflect.internal.MissingRequirementError$.signal(MissingRequirementError.scala:16)
[scalac] at scala.reflect.internal.MissingRequirementError$.notFound(MissingRequirementError.scala:17)
[scalac] at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:48)
[scalac] at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:40)
[scalac] at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:40)
[scalac] at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:61)
[scalac] at scala.reflect.internal.Mirrors$RootsBase.getClassByName(Mirrors.scala:99)
[scalac] at scala.reflect.internal.Mirrors$RootsBase.getRequiredClass(Mirrors.scala:102)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.ObjectClass$lzycompute(Definitions.scala:262)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.ObjectClass(Definitions.scala:262)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.AnyRefClass$lzycompute(Definitions.scala:261)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.AnyRefClass(Definitions.scala:261)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.specialPolyClass(Definitions.scala:1111)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.RepeatedParamClass$lzycompute(Definitions.scala:405)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.RepeatedParamClass(Definitions.scala:405)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.syntheticCoreClasses$lzycompute(Definitions.scala:1145)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.syntheticCoreClasses(Definitions.scala:1143)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.symbolsNotPresentInBytecode$lzycompute(Definitions.scala:1187)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.symbolsNotPresentInBytecode(Definitions.scala:1187)
[scalac] at scala.reflect.internal.Definitions$DefinitionsClass.init(Definitions.scala:1252)
[scalac] at scala.tools.nsc.Global$Run.(Global.scala:1290)
[scalac] at scala.tools.ant.Scalac.executeInternal(Scalac.scala:699)
[scalac] at scala.tools.ant.Scalac.execute(Scalac.scala:647)
[scalac] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
[scalac] at jdk.internal.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
[scalac] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[scalac] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[scalac] at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99)
[scalac] at org.apache.tools.ant.Task.perform(Task.java:350)
[scalac] at org.apache.tools.ant.Target.execute(Target.java:449)
[scalac] at org.apache.tools.ant.Target.performTasks(Target.java:470)
[scalac] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1388)
[scalac] at org.apache.tools.ant.Project.executeTarget(Project.java:1361)
[scalac] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
[scalac] at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
[scalac] at org.apache.tools.ant.Main.runBuild(Main.java:834)
[scalac] at org.apache.tools.ant.Main.startAnt(Main.java:223)
[scalac] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:284)
[scalac] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:101)
BUILD FAILED
/Homokaryon-Expression/test_output/run/ara/build.xml:130: Compile failed because of an internal compiler error (object java.lang.Object in compiler mirror not found.); see the error output for details.
Total time: 1 second
[Tue Mar 21 23:50:52 2023]
Error in rule build_ara:
jobid: 15
input: /Homokaryon-Expression/test_output/run/ara/README.md
output: /Homokaryon-Expression/test_output/run/ara/build/ara.jar
shell:
cd dirname "/Homokaryon-Expression/test_output/run/ara/README.md" && ant
cd dirname "/Homokaryon-Expression/A4_output/run/ara/README.md" && unzip -d build ara-development.zip
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2023-03-21T235048.452923.snakemake.log