Diary

4 Mar, 2020

• Recap
  • Update on filesystem organization
  • Update on pipeline organization
• What was accomplished the past week
  • Web server up and running with neuroglancer https://activebrainatlas.ucsd.edu
  • Birdstore file server in the process of being organized
  • Admin interface to database available at: https://activebrainatlas.ucsd.edu (ask Ed for login credentials)
  • Thumbnail listing available at: https://activebrainatlas.ucsd.edu/activebrainatlas/image-listing
  • Datajoint populate method working
• Demos
• Neuroglancer
• Admin interface
• Thumbnail viewer
• Datajoint populate viewer
• What to do next week
• Get DK43 further along
• Get some type of project planning system for the brains. Keep track of what is going on.
• Refine the datajoint populate methods
• Get Alex's GUI implemented into the new pipeline.

26 Feb, 2020

• Litao and Ed working on database integration

• Alex moving GUI scripts into the views area

• Sid is working on Neuroglancer

  • Get forks
  • Contact the programmers, get contact info, emails.
  • Demo the sliders
  • Demo the adjusting annotations with mouse
  • New annotations

• use python libraries instead of imagemagick

• organize birdstore