In Vivo Organizer

Overview

The In Vivo Organizer is a web-based application designed to assist researchers in managing their animal experiments. The tool provides a dynamic dashboard, experiment planning, animal tracking, and schedule management. It allows researchers to set up new experiments, track animals, manage their health status, and visualize experiment timelines. It provides a dynamic dashboard to manage the life cycle of experiments, from planning to monitoring.

Features

• Experiment Management: Add, delete, and view experiments.
• Animal Management: Add, modify, and delete animals associated with experiments.
• Animal Treatments: Add treatments and view details of treatments for each animal.
• Event Scheduling: Add and view events on the calendar for each experiment.
• Filtering: Filter animals by species, age, weight, genotype, and status.

Project Structure

Here’s how the project is organized:

your_project/
│
├── app.py # Main Flask application
│
├── templates/ # HTML templates for the app
│ ├── index.html
│ ├── add_experiment.html
│ └── ...
│ └── database.db # SQLite database (auto-created if not exists)

Requirements

• Python 3.6+ (Python 3.13 is currently not fully supported)
• Flask
• Bootstrap (for styling)
• SQLite (no need to install)

You can install the required dependencies using the following:

pip install -r requirements.txt

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Steps to Install

1. Clone the repository:

   git clone https://github.com/AdiBarnoor/In-vivo-organizer.git
   cd In-vivo-organizer

2. Create a virtual environment:

   python -m venv venv
   source venv/bin/activate  # On Windows, use 'venv\Scripts\activate'

3. Install dependencies:

   pip install -r requirements.txt

4. Run the app:

   python app.py

Visit http://127.0.0.1:5000/ in your browser to see the app in action!

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Technology Stack

• Backend: Python, Flask
• FrontEnd: HTML, CSS, Bootstrap4
• Database: JSON