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Merged
merged 60 commits into from
Dec 1, 2022
Merged

Release LFP notebook #59

merged 60 commits into from
Dec 1, 2022

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@rcpeene
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@rcpeene rcpeene commented Nov 7, 2022

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@rcpeene rcpeene mentioned this pull request Nov 7, 2022
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@jeromelecoq jeromelecoq changed the title Dev Create an LFP analysis notebook Nov 8, 2022
rcpeene and others added 14 commits November 8, 2022 14:06
@rcpeene
Incremental changes, extracting ophys data from NWB file
6050fe4
@rcpeene
Merge branch 'main' of https://github.com/AllenInstitute/openscope_da…
3a55666 
…tabook into dev
@rcpeene
Ensure consistent formatting and fix typos
ea034bf
@rcpeene
Added download nwb cells to visualization notebooks. Formatting and o…
eeba739 
…rganization fixes. Allow setting of interpolated lfp hz in lfp visualization notebook
@rcpeene
Added ability to set Hz of interpolated lfp data
18a716a
@rcpeene
Merge branch 'main' of https://github.com/AllenInstitute/openscope_da…
8482ddc 
…tabook into visualize_2p_raw
@rcpeene
Changed filename
725e7e3
@rcpeene
Added download cell with example file. Included all output saved
b91ab90
@rcpeene
Added printing of ROI mask
83b6eee
@rcpeene
Overlaid ROI masks onto movie
69237fd
@rcpeene
Added download cell and included output in neuropixel probe visualiza…
dcf8b56 
…tion
@rcpeene
Added fluorescence trace
9bdd3f0
@jeromelecoq
adjust stat description for accuracy
153efd5
@rcpeene
Update visualize_neuropixel_probes.ipynb
607e397
rcpeene and others added 20 commits November 16, 2022 15:57
@rcpeene
Completed 2p raw visualization with output
66c7f51
@rcpeene
Update brainrender version with embedded window bugfix
e86e06d
@rcpeene
Improved colorbar label
5099dd0
@rcpeene
Merge branch 'dev' of https://github.com/AllenInstitute/openscope_dat…
0250f14 
…abook into dev
@rcpeene
Fixed filepath
db375c3
@rcpeene
Removed 'nwb-cache' from file streaming
7b02275
@rcpeene
Moved 'filepath' definition in notebooks for convenience
615f065
@rcpeene
Merge branch 'dev' into visualize_2p_raw
4d63ff3
@rcpeene
Added selection of 'period' within LFP data
9df5f9f
@jeromelecoq
various typos and units correction
877b2a8
@rcpeene
Optimized interpolation step to use less memory
76223d4
@rcpeene
Changed filepath
72af77b
@rcpeene
Lowered setting values to conserve memory for usage on binder
6d59fa3
@rcpeene
Merge pull request #83 from AllenInstitute/visualize_2p_raw
8326068 
Adding 2p raw notebook to next release
@rcpeene
Merge branch 'dev' of https://github.com/AllenInstitute/openscope_dat…
387a0b4 
…abook into dev
@rcpeene
Added 'start' script for binder
57c8601
@rcpeene
Added line to ensure start file works
aeff8d9
@rcpeene
Changed download location and period selection parameter
d23134e
@rcpeene
Delete start
8ae3f42
@rcpeene
Fixed confidence interval calculation
a04304d
@rcpeene rcpeene changed the title Create an LFP analysis notebook Release LFP, eye tracking, and 2p raw notebooks Nov 30, 2022
@rcpeene rcpeene changed the title Release LFP, eye tracking, and 2p raw notebooks Release LFP notebook Dec 1, 2022
@rcpeene rcpeene merged commit da18299 into main Dec 1, 2022
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@jeromelecoq jeromelecoq Awaiting requested review from jeromelecoq

@Ahad-Allen Ahad-Allen Awaiting requested review from Ahad-Allen

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@rcpeene @jeromelecoq