Add UV workflows

[galenlynch]

This creates three reusable workflows that perform

• Linting and testing: ci-uv.yml
• Automatic version bumping based on commit message: bump-version.yml
• Creation of github release when a tag is pushed and, if desired, publishing to pypi: publish.yml

For these to be used by other repositories, they must be in the .github/workflows directory, as is stated in the reusable workflow documentation. However, they should not run on this repo, because reusable workflows must be trigerred on workflow_call—not push, pull, or the like.

I have also added example workflows in the examples/ folder that consume each of these reusable workflows, with conditional triggering in a way that I think makes sense:

• Run CI on all pushes and pull requests, or manually. Skip if the commit was made by a bot or has "bump:" in the title, or if the PR is a draft, or manually triggered
• Bump versions if the CI workflow completed successfully on main, or manually. Skip if the commit message started with "bump:"
• Publish if a tag is pushed, or triggered manually on only a tag.

I have updated the README accordingly. Projects must be configured to use uv and have the listed dependencies to use ci-uv.yml.

I think at some point ci.yml should be replaced by the ci-uv.yml in this PR, possbily with some changes. The current ci.yml is not callable, as far as I can tell.

[galenlynch]

Also each example uses concurrency groups to cancel duplicative workflows.

[galenlynch]

@jtyoung84

[galenlynch]

Whoops I just noticed that I accidentally deleted stuff in my branch, I will amend the PR to not delete the original files.

[galenlynch]

The copilot review made me realize that I need to change the optional deps part of my projects, and sync the project with uv without using --extras. I will fix that, and then mark the PR as ready for review.

[jtyoung84]

The copilot review made me realize that I need to change the optional deps part of my projects, and sync the project with uv without using --extras. I will fix that, and then mark the PR as ready for review.

Sounds good.

[Copilot]

Pull Request Overview

This PR introduces three reusable GitHub Actions workflows for UV-based Python projects, along with supporting configuration and documentation. The workflows provide automated CI/CD capabilities including testing, version bumping, and publishing.

• Adds three reusable workflows: ci-uv.yml for linting/testing, bump-version.yml for automated versioning, and publish.yml for release creation and PyPI publishing
• Provides example calling workflows demonstrating proper usage patterns with conditional triggering
• Updates documentation with workflow requirements and conventional commit guidelines

Reviewed Changes

Copilot reviewed 8 out of 8 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
.github/workflows/ci-uv.yml	Reusable CI workflow with UV package manager, linting, testing, and wheel smoke testing
.github/workflows/bump-version.yml	Automated version bumping using commitizen based on conventional commits
.github/workflows/publish.yml	Release creation and optional PyPI publishing workflow
examples/ci-call.yml	Example CI workflow with conditional execution logic
examples/bump-call.yml	Example version bump workflow triggered by CI completion
examples/publish-call.yml	Example publish workflow for tag-based releases
.github/dependabot.yml	Dependabot configuration for GitHub Actions updates
README.md	Updated documentation with workflow requirements and conventional commit guidelines

[galenlynch]

This works with all of the changes I made based on copilot's reviews. I just tested all of the workflows in https://github.com/AllenNeuralDynamics/aind-mri-utils

[jtyoung84]

Looks good. Thanks for the contribution.