Discussion: meetings/2026-10-06

[lrudelt]

@jeromelecoq if we have time, we could quickly discuss the RF Figure. We have put together a suggestion for the paper figure and would need feedback to finalize the analysis and code so that it can be incorporated. The plots below are generated from one example session for each recording modality.

[jeromelecoq]

1/ I merged everyone PR figure into the p3 GitHub repo.
2/ I started to shape the text. https://allenneuraldynamics.github.io/openscope_p3_data_release_paper/
3/ I also created this website in the last few months for collaborative Myst editing :
https://demystify-aind.replit.app/?doc=e0972812-2631-48f0-930a-c72ce5eab5b8#collaborate=TLboaFOkOIwgPgxqR_w3F80mwKmbWumfJYiEUTYhUJg

Please feel free to play with this demystify page. It allows to post comments and create pull request toward the repo if you log in via your GitHub credentials.

I am hoping tomorrow we go through the entire manuscript and decide on the best way to structure given all that we have now.

[jeromelecoq]

Here is what I noted today :

Manuscript part	Figure	Next action	Owner
Abstract	None	Everyone post comment on the abstract, here :
1. Experimental design	Figs. 1-3	Polish text/captions; check consistency with final structure	Jerome (@jeromelecoq)
2. Dataset summary	Fig. 4	Final completeness and presentation review after merges	Modality specific teams
3. NWB walkthrough	Fig. 5	Simplify explanatory text; review table formatting	Carter (@rcpeene)
4. Raw data	Fig. 6	Try to merge the figures	Jerome (@jeromelecoq)
5. Unit extraction	Fig. 7
6. SNR / quality	TBD	Ido (@ido4848) to review PR Nicholas (@Dedalus9) to submit his figure Sarah’s team (@Sarruedi, @yhcheah804) to submit their figure Davis (@davisgrubin) to submit his figure	Ido (@ido4848); Nicholas (@Dedalus9); Sarah team (@Sarruedi, @yhcheah804); Farzaneh (@farznaj)
7. Receptive fields	Fig. 8	Commit panel code/assets; add interpretation paragraph	Lucas (@lrudelt)
8. Cell typing: optotagging	TBD	Write interpretation and integrate into cell-typing narrative	Roberto (@RobertoDF)
9. Cell typing: WaveMap	TBD	Condense and integrate with optotagging	Sarah’s team (@Sarruedi, @mariannasidiropoulou)
10. Transcriptomics	Future panels	Review upcoming material; decide current-paper minimum vs later revision	Jerome (@jeromelecoq) / transcriptomics team at next meeting
11. Responsive units	TBD	Redesign static figure B->A Move all context to an interactive supplemental	David (@davidgwyrick) + Jerome (@jeromelecoq)
12. Oddball responses	TBD	Build a compact cross-modality example; avoid strong comparative claims	David (@davidgwyrick)
13. Behavior	Final main figure?	Keep separate from neural responses. Write down narrative along figure. David (@davidgwyrick) to help with text around running analysis.	Jerome (@jeromelecoq) / David (@davidgwyrick)
14. LFP	Supplement?	Post analysis; Create supplementary figure.	Antonio (@antonio-velazquezr)