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sulheim
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Jan 12, 2021
sulheim
commented
- Update README
- Update requirements with lxml package
- Update exception handling in get_mibig.py
- Add notebook for BGC type analysis
- Add calculation of correlations in make_figures.py
Changed the name of Methoxymalonyl-ACP which was erroneously named methoxymalonyl-CoA. This included wrong substrate in the synthesis reeaction (coa vs ACP), but it does not affect any predictions. That is because the coa/acp substrate is immediately released in the next reaction attaching methoxymalonyl-CoA to the polyketide chain.
Improve handling of exceptions in get_mibig.py and add lxml package to requirements.txt
* Fix release tag * Update README.md Add release date tag * Correction of name and prediction of correlations (#2) * Add zenodo tag
The jupyter notebook BGC_type_analysis.ipynb analysis the different type of NRPS/PKS clusters in the MIBiG dataset
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