MidlineIdentifier allows comparison of the spatial dynamics and polarization of gene profiles across budoids of varying sizes. A more detailed description of the method can be found in our paper.
Download
git clone https://github.com/AztekinLab/MidlineIdentifier.gitCreate and activate a fresh conda environment:
cd MidlineIdentifier
conda create -n MLI python=3.9
conda activate MLIFinally, install MidlineIdentifier:
pip install .Please see the documentation for full explanation.
cd example
python example.py --dir ./data/Budoid_1A --sample Budoid_1A