Updated documentation for LIN-codes
Added instructions for building profile index
Updated Running MiST (markdown)
Updated Downloading schemes (markdown)
Updated _Sidebar (markdown)
Updated Phylogenomic investigation of Yersinia enterolitica (markdown)
Updated Phylogenomic investigation of *Yersinia enterolitica* (markdown)
Created Phylogenomic investigation of *Yersinia enterolitica* (markdown)
Updated Installation (markdown)
Updated LINcodes (markdown)
Added documentation for extracting LINcodes
Updated documentation with the mist list command
Updated documentation for new cli
Created _Sidebar (markdown)
Created Phylogenies (markdown)
Created Running MiST (markdown)
Created Indexing schemes (markdown)
Created Downloading schemes (markdown)
Created Installation (markdown)