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Fdog assembly v0.1.5#39

Merged
HannahBioI merged 80 commits intoBIONF:fdog_goes_assemblyfrom
HannahBioI:fdog-assembly
Feb 9, 2024
Merged

Fdog assembly v0.1.5#39
HannahBioI merged 80 commits intoBIONF:fdog_goes_assemblyfrom
HannahBioI:fdog-assembly

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Bug fix:
muscle v5
not terminating if FAS raises Error
smaller bug fixes

New functions:
Isoform function
gff output
augustusRefSpecFile

trvinh added 30 commits March 15, 2022 14:19
* create v0.1.0

* simplfying hamstr.pl

* first python conversion

* modified addTaxon and addTaxa

* added install/check dependencies

* rename data folders

* added runtime for core complilation
…not delete data; correct profile output with fasOff
…not delete data; correct profile output with fasOff
HannahBioI and others added 29 commits September 18, 2023 17:27
…ionally bugfix in co-ortholog detection if MSA crashed due to too many sequences.
…OG-Assembly into fdog-assembly"

This reverts commit d688bbb, reversing
changes made to 5068b7a.
deactivate fas config output
 into fdog-assembly

# Conflicts:
#	fdog/fDOGassembly.py
…ntaining @ sysmbols, adapted mergeOutput that merges files with _og ending
@HannahBioI HannahBioI merged commit 844c02d into BIONF:fdog_goes_assembly Feb 9, 2024
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2 participants