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Migration to QuPath 0.6.x

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@Rdornier Rdornier released this 11 Aug 11:51
· 58 commits to main since this release

This release make the extension compatible with QuPath 0.6.x and fixes a bunch of bugs / features

Bug fix

  • Enable to use MAC GPU option (thanks to @AlbertDominguez in #8)
  • When running spotiflow on multiple channels, all the points for all the channels are now correctly displayed - fix #11
  • Forcing minDistance parameter to be an integer number - fix #12
  • Correctly handle waitFor() process on Mac systems - fix #15
  • Try to separate UI code in a separate JavaFX thread - fix #15
  • Remove points ouside parent shape - fix #14
  • Fix compatibility with spotiflow 0.5.7 and 0.5.8 - fix #13
  • Fix warning on null PathClass by using .resetPathClass() instead

New feature

  • Saving temp images as OME-Zarr files (only from spotiflow 0.5.8) - fix #9 and #2
  • Set options to clear child object or not
  • Set option to save the builder

Refactor

  • Add a supplementary folder layer in the temp dir to separate shapes between images
  • Run spotiflow command only once, even if multiple channels/parents are selected
  • Refactor savePredictionImages to cleanTempDir
  • Update github actions