GitHub - BNadel/GEDITExpanded: Contains complete materials associated with the GEDIT tool, including previous versions and all data presented in the publication

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Application		Application
ExampleMixtures		ExampleMixtures
GEDITv1.7		GEDITv1.7
GEDITv2.0		GEDITv2.0
GEDITv2.1		GEDITv2.1
GEDITv2.2		GEDITv2.2
GEDITv3.0		GEDITv3.0
ReferenceMatrices		ReferenceMatrices
LICENSE		LICENSE
README.txt		README.txt
TrueProportions_ImmuneCellMix.csv		TrueProportions_ImmuneCellMix.csv

Repository files navigation

Author: Brian Nadel


The data and scripts here represent the 

Contents are as follows

Application:
	As detailed in the GEDIT paper, we have applied GEDIT to tissue samples taken in vivo in 3 contexts.
        These are a) the GTEX database b) the mouse body atlas and c) a set of skin samples from humans with various skin diseases


GEDITv1.6:
	This contains a previous version of GEDIT, which runs preprocessing steps in python and the final linear regression in R
	
GEDITv2.1
	This most recent version of GEDIT is streamlined to be run entirely in python2

ReferenceMatrices:
        We have obtained or assembled 11 references matrices that are saved here and available for use by other parties