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Merged
jkanche merged 2 commits into from
May 5, 2025
Merged

Switch to trusted publisher workflow to publish builds #67

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Switch to trusted publisher workflow to publish builds
jkanche May 5, 2025
de9dba2
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 5, 2025
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13 changes: 8 additions & 5 deletions .github/workflows/publish-pypi.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,11 @@
jobs:
build:
runs-on: ubuntu-latest
permissions:
id-token: write
repository-projects: write
contents: write
pages: write

steps:
- uses: actions/checkout@v4
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run: |
python -m tox -e clean,build

- name: Publish package
uses: pypa/gh-action-pypi-publish@v1.12.2
with:
user: __token__
password: ${{ secrets.PYPI_PASSWORD }}
# This uses the trusted publisher workflow so no token is required.
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1

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Code scanning / CodeQL

Unpinned tag for a non-immutable Action in workflow Medium

Unpinned 3rd party Action 'Publish to PyPI' step
Uses Step
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uses 'pypa/gh-action-pypi-publish' with ref 'release/v1', not a pinned commit hash
3 changes: 2 additions & 1 deletion CHANGELOG.md
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@@ -1,9 +1,10 @@
# Changelog

## Version 0.5.8
## Version 0.5.8 - 0.5.9

- Rename `reduced_dims` to `reduced_dimensions`. Constructor accepts both these arguments for backwards compatibility.
- Additionally, SCE's constructor takes kwargs for future proofing any additional attributes in the upstream classes.
- Fix an issue coercing objects to `to_anndata`, where it skips alternative experiments.

## Version 0.5.7

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