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jwcodee merged 2 commits into from
Sep 11, 2024
Merged

prepare for release 2.3.9 #483

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prepare for release 2.3.9
jwcodee Sep 11, 2024
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Update ChangeLog
jwcodee Sep 11, 2024
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7 changes: 7 additions & 0 deletions ChangeLog
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2024-09-11 Johnathan Wong <jowong@bcgsc.ca>

* Release version 2.3.9

General:
* Deallocate memory used by alignment data structure in dialign

2024-07-18 Lauren Coombe <lcoombe@bcgsc.ca>

* Release version 2.3.8
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2 changes: 1 addition & 1 deletion Misc/samtobreak.hs
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Expand Up @@ -279,7 +279,7 @@ parseArgs = do
where
help = putStr (usageInfo usage options) >> exitSuccess
tryHelp = "Try 'abyss-samtobreak --help' for more information."
version = "abyss-samtobreak (ABySS) 2.3.8\n"
version = "abyss-samtobreak (ABySS) 2.3.9\n"
usage = "Usage: samtobreak [OPTION]... [FILE]...\n\
\Calculate contig and scaffold contiguity and correctness metrics.\n"

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2 changes: 1 addition & 1 deletion README.md
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[![Release](https://img.shields.io/github/release/bcgsc/abyss.svg)](https://github.com/bcgsc/abyss/releases)
[![Downloads](https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github)](https://github.com/bcgsc/abyss/releases/download/2.3.8/abyss-2.3.8.tar.gz)
[![Downloads](https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github)](https://github.com/bcgsc/abyss/releases/download/2.3.9/abyss-2.3.9.tar.gz)
[![Conda](https://img.shields.io/conda/dn/bioconda/abyss?label=Conda)](https://anaconda.org/bioconda/abyss)
[![Issues](https://img.shields.io/github/issues/bcgsc/abyss.svg)](https://github.com/bcgsc/abyss/issues)

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2 changes: 1 addition & 1 deletion bin/abyss-pe
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Expand Up @@ -414,7 +414,7 @@ help:
@echo 'Report bugs to https://github.com/bcgsc/abyss/issues or abyss-users@bcgsc.ca.'

version:
@echo "abyss-pe (ABySS) 2.3.8"
@echo "abyss-pe (ABySS) 2.3.9"
@echo "Written by Shaun Jackman and Anthony Raymond."
@echo
@echo "Copyright 2012 Canada's Michael Smith Genome Science Centre"
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2 changes: 1 addition & 1 deletion configure.ac
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AC_PREREQ(2.62)
AC_INIT(ABySS, 2.3.8, abyss-users@bcgsc.ca, abyss,
AC_INIT(ABySS, 2.3.9, abyss-users@bcgsc.ca, abyss,
http://www.bcgsc.ca/platform/bioinfo/software/abyss)

AC_CONFIG_MACRO_DIR([m4])
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2 changes: 1 addition & 1 deletion doc/ABYSS.1
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.TH ABYSS "1" "2015-May" "ABYSS (ABySS) 2.3.8" "User Commands"
.TH ABYSS "1" "2015-May" "ABYSS (ABySS) 2.3.9" "User Commands"
.SH NAME
ABYSS \- assemble short reads into contigs
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion doc/abyss-pe.1
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.TH abyss-pe "1" "2015-May" "abyss-pe (ABySS) 2.3.8" "User Commands"
.TH abyss-pe "1" "2015-May" "abyss-pe (ABySS) 2.3.9" "User Commands"
.SH NAME
abyss-pe - assemble reads into contigs
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion doc/abyss-tofastq.1
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.TH abyss-tofastq "1" "2015-May" "ABySS 2.3.8" "User Commands"
.TH abyss-tofastq "1" "2015-May" "ABySS 2.3.9" "User Commands"
.SH NAME
abyss-tofastq \- convert various file formats to FASTQ format
.br
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