Skip to content

Prepare for release v1.1.5 #114

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
lcoombe merged 1 commit into from
Aug 19, 2024
Merged

Prepare for release v1.1.5 #114

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -127,7 +127,7 @@ ntJoin assemble target=my_scaffolds.fa target_weight=1 reference_config=config_f

#### Installing ntJoin using Conda
```sh
conda install -c bioconda -c conda-forge ntjoin=1.1.4
conda install -c bioconda -c conda-forge ntjoin=1.1.5
```

#### Installing ntJoin using Brew
Expand All @@ -138,7 +138,7 @@ brew install brewsci/bio/ntjoin

#### Installing ntJoin from the source code
```sh
curl -L --output ntJoin-1.1.4.tar.gz https://github.com/bcgsc/ntJoin/releases/download/v1.1.4/ntJoin-1.1.4.tar.gz && tar xvzf ntJoin-1.1.4.tar.gz
curl -L --output ntJoin-1.1.5.tar.gz https://github.com/bcgsc/ntJoin/releases/download/v1.1.5/ntJoin-1.1.5.tar.gz && tar xvzf ntJoin-1.1.5.tar.gz
```

## Dependencies
Expand Down
2 changes: 1 addition & 1 deletion bin/ntjoin_run.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ def parse_arguments():
"increasing/decreasing to assign contig orientation [90]\n "
"Note: Only used with --mkt is NOT specified", default=90, type=int)
parser.add_argument('-t', help="Number of threads for multiprocessing [1]", default=1, type=int)
parser.add_argument("-v", "--version", action='version', version='ntJoin v1.1.4')
parser.add_argument("-v", "--version", action='version', version='ntJoin v1.1.5')
parser.add_argument("--agp", help="Output AGP file describing scaffolds", action="store_true")
parser.add_argument("--no_cut", help="Do not cut input contigs, place in most representative path",
action="store_true")
Expand Down
6 changes: 3 additions & 3 deletions ntJoin
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

# ntJoin: Scaffold assemblies using reference assemblies and minimizer graphs
# Written by Lauren Coombe @lcoombe
# ntJoin v1.1.4
# ntJoin v1.1.5

# Input files
target=None
Expand Down Expand Up @@ -117,7 +117,7 @@ endif
help:
@echo ""
@echo "ntJoin: Scaffolding assemblies using reference assemblies and minimizer graphs"
@echo "ntJoin v1.1.4"
@echo "ntJoin v1.1.5"
@echo "Usage: ntJoin assemble target=<target scaffolds> references='List of reference assemblies' reference_weights='List of weights per reference assembly'"
@echo ""
@echo "Options:"
Expand Down Expand Up @@ -186,7 +186,7 @@ ifeq ($(ref), None)
endif

version:
@echo "ntJoin v1.1.4"
@echo "ntJoin v1.1.5"
@echo "Written by Lauren Coombe (lcoombe@bcgsc.ca)"

check_install:
Expand Down
2 changes: 1 addition & 1 deletion setup.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@

setuptools.setup(
name="ntJoin",
version="1.1.4",
version="1.1.5",
author="Lauren Coombe",
author_email="lcoombe@bcgsc.ca",
description="Genome assembly scaffolder using minimizer graphs",
Expand Down