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Merged
lcoombe merged 1 commit into from
Feb 5, 2021
Merged

Release v1.0.6 #62

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4 changes: 2 additions & 2 deletions bin/ntjoin_assemble.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1010,7 +1010,7 @@ def parse_arguments():
"increasing/decreasing to assign contig orientation [90]\n "
"Note: Only used with --mkt is NOT specified", default=90, type=int)
parser.add_argument('-t', help="Number of threads [1]", default=1, type=int)
parser.add_argument("-v", "--version", action='version', version='ntJoin v1.0.5')
parser.add_argument("-v", "--version", action='version', version='ntJoin v1.0.6')
parser.add_argument("--agp", help="Output AGP file describing scaffolds", action="store_true")
parser.add_argument("--no_cut", help="Do not cut input contigs, place in most representative path",
action="store_true")
Expand Down Expand Up @@ -1040,7 +1040,7 @@ def print_parameters(self):

def main(self):
"Run ntJoin graph stage"
print("Running ntJoin v1.0.5 ...\n")
print("Running ntJoin v1.0.6 ...\n")
self.print_parameters()

# Parse the weights of each input reference assembly
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6 changes: 3 additions & 3 deletions ntJoin
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Expand Up @@ -2,7 +2,7 @@

# ntJoin: Scaffold assemblies using reference assemblies and minimizer graphs
# Written by Lauren Coombe @lcoombe
# ntJoin v1.0.5
# ntJoin v1.0.6

# Input files
target=None
Expand Down Expand Up @@ -103,7 +103,7 @@ endif
help:
@echo ""
@echo "ntJoin: Scaffolding assemblies using reference assemblies and minimizer graphs"
@echo "ntJoin v1.0.5"
@echo "ntJoin v1.0.6"
@echo "Usage: ntJoin assemble target=<target scaffolds> references='List of reference assemblies' reference_weights='List of weights per reference assembly'"
@echo ""
@echo "Options:"
Expand Down Expand Up @@ -171,7 +171,7 @@ ifeq ($(ref), None)
endif

version:
@echo "ntJoin v1.0.5"
@echo "ntJoin v1.0.6"
@echo "Written by Lauren Coombe (lcoombe@bcgsc.ca)"

.PHONY: help all version analysis assemble check_params jupiter
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -5,7 +5,7 @@

setuptools.setup(
name="ntJoin",
version="1.0.5",
version="1.0.6",
author="Lauren Coombe",
author_email="lcoombe@bcgsc.ca",
description="Genome assembly scaffolder using minimizer graphs",
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