The following excerpt from blake3_utils::init_state corresponds to assigning the words v12, v13, v14, v15 in the state to t_0, t_1, b, d in section 2.2 of the BLAKE3 specification.
state.push(stack.number_u32(0));
state.push(stack.number_u32(counter));
state.push(stack.number_u32(block_len));
state.push(stack.number_u32(flags));
In this implementation, counter is 32 bits; in the specification, t_0 is the low-order word of a 64-bit counter, and t_1 is the high-order word. Pushing 0 before counter is effectively treating counter as t_1 instead of as t_0, which is inconsistent with the specification's endianness. Additionally, the following excerpt from blake3_utils::compress corresponds to h′_i ←v′i ⊕v′{i+8}, which is only correct for 0 ≤i < 8. For 8 ≤i < 16, the specified formula is h′_i ←v′i ⊕h{i−8}, where h is the state prior to the application of the round functions.
Since this implementation is limited to one blake3 chunk (1,024 bytes), and t_1 · 2^64 + t_0 is a count in chunks, this does not currently (at the time of writing) affect correctness (i.e., counter is always 0 in the current implementation), but this will affect correctness if that limitation is ever lifted.