[BI-1088] Germplasm List Download

[HMS17]

Description

Story: BI-1088 - Germplasm List Export File

• Enabled export of data as xlsx file by adding ExcelWriter.
• Enabled export of Germplasm List data
• Added "/programs/{programId}/germplasm/lists/{listDbId}/export" endpoint to call export of Germplasm List data
• Added exportGermplasmList to BrAPIGermplasmService.java to retrieve Germplasm List and Germplasm data and convert it into a format that could be used by ExcelWriter
• Added helper method removeAppendedKey to BrAPIGermplasmService to remove key appended to the Germplasm List name
• Added Column model to represent columns for aid in file export
• Added Pedigree model to aid in parsing pedigree information on backend
• Added GermplasmFileColumns to represent columns in Germplasm File for aid in export
• Added getListById in BrAPIListDAO.java and getGermplasmByName in BrAPIGermplasmDAO.java to retrieve relevant data from database

Dependencies

bi-web/BI-1088

Testing

see testing for bi-web/BI-1088

Checklist:

• I have performed a self-review of my own code
• I have tested my code and ensured it meets the acceptance criteria of the story
• I have create/modified unit tests to cover this change
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to documentation
• I have run TAF: <link to TAF run>

[dmeidlin]

It looks like listSearch isn't used and can be removed.

[HMS17]

Good catch! Removed.

[davedrp]

First failed Test

STEPS

1. uploaded Missing_1_male_eNo.xls (row 3 has a Female Parent Entry No but no Male Parent Entry No)
   NOTE: Shawn says that having only a female parent is valid. She says:

If germplasm is cloned, the parent is considered the mother (even if it gender of the individual is hermaphroditic or male)

2)Tried to download the data.

OUTCOME:
A new browser tab was open with the message:
SyntaxError: JSON.parse: unexpected character at line 1 column 1 of the JSON data

EXPECTED
A) the download list xsl
-also -
B) If there is an error, then a more user-friendly error message.

[davedrp]

Second failed Test

STEPS

1. uploaded pedigree_by_GID_small.xls(has Female Parent GID and Male Parent GID)

2)Tried to download the data.

OUTCOME:
A new browser tab was open with the message:
SyntaxError: JSON.parse: unexpected character at line 1 column 1 of the JSON data

EXPECTED
A) the download list xsl

[HMS17]

Second failed Test

STEPS

1. uploaded pedigree_by_GID_small.xls(has Female Parent GID and Male Parent GID)

2)Tried to download the data.

OUTCOME: A new browser tab was open with the message: SyntaxError: JSON.parse: unexpected character at line 1 column 1 of the JSON data

EXPECTED A) the download list xsl

Tests should be passing now