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fixed broken links #26

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wsjung merged 1 commit into from
Sep 30, 2025
Merged

fixed broken links #26

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4 changes: 2 additions & 2 deletions docs/getting_started.md
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Expand Up @@ -48,7 +48,7 @@ $ ./fishnet.sh --test

### Execution
Here we show the most basic steps for a FISHNET analysis. There are a variety of
configuration options which are detailed in [Configuration](/configuration).
configuration options which are detailed in [Configuration]({% link configuration.md %}).
This code chunk assumes that you have an input summary statistics file (comma-separated with columns named "Genes" and
"p_vals") and a set of tab-delimited network module files.

Expand Down Expand Up @@ -117,5 +117,5 @@ results/
The `GO_summaries/` directory lists statistics for the GO overrepresentation analysis.
The FISHNET genes for the trait and the network the genes originate from can be found in `summary/<network>_<trait>_fishnet_genes_<FDR-threshold>.csv`

Read through the [Example](/example) to interpret the output files.
Read through the [Example]({% link example.md %}) to interpret the output files.