CRISPIN 1.1.0

• CLI updates: (#58, @kelly-sovacool)
  • Use nextflow run -resume by default, or turn it off with crispin run --forceall.
  • Add --output argument for crispin init and crispin run.
    • If not provided, commands are run in the current working directory.
    • This is equivalent to the nextflow $launchDir constant.
  • The nextflow preview is printed before launching the actual run.
• Nextflow updates:
  • Enable nextflow timeline & trace reports by default. (#55, @kelly-sovacool)
  • Set the publish_dir_mode nextflow option to link by default. (#58, @kelly-sovacool)
  • Set the process.cache nextflow option to deep by default on biowulf. (#58, @kelly-sovacool)
• Minor documentation updates. (#57, @kelly-sovacool)
• Fix spelling of shared SIF directory on biowulf -- it is /data/CCBR_Pipeliner/SIFs with a lowercase "s" at the end. (#54, @kelly-sovacool)